Tools to detect synteny blocks regions among multiple genomes
...es comparative genomic analysis. It is designed for constructing and visualizing synteny maps between two or t...ynBrowse (Synteny Browser) is a generic sequence comparison tool for visualizing genome alignments both within...2608 days ago
List of gene ontology software and tools
....wehi.edu.au/ GOrilla (Technion - Laboratory of Computational Biology , Israel Institute of Technology) GOrilla is a tool for identifying and visualizing enriched GO terms in ranked l...3708 days ago
Software developed in pevsner lab
...enes Online SNOMAD: Standardization and Normalization of Microarray Data SNPduo: SNP Analysis Between Two Individuals SNPtrio: Analyzing and Visualizing and Inheritance Patterns in T...3497 days ago
HOMER: Software for motif discovery and next-gen sequencing analysis
...Checking sequence quality, trimming, general sequence manipulation Mapping reads to a reference genome Manipulating SAM/BAM alignment files Visualizing data in a genome browser R...2929 days ago
Awesome perl frameworks, libraries and software - PART 4
...odes for Coda 2. norm/homedir - Public home directory files nindwen/config - Arch Linux config-files lvc/pkgdiff - A tool for visualizing changes in Linux software pac...2492 days ago
Next generation sequencing in R or bioconductor environment
...s Packages Bioconductor provides various packages for analyzing and visualizing ChIP-Seq data. Only a small s...nd genomes Genominator: Tools for storing, accessing, analyzing and visualizing genomic data. To ins...3623 days ago
Comprehensive list of visualization tools for biological pathways
...ttp://bina.unipax.info/ BioTapestry Interactive tool for building, visualizing and sharing gene regulatory n...Genes and Genomes pathways http://www.genome.jp/kegg/ Omix Visualizing multi-omics data in metabolic...2285 days ago
Des Higgins: Visualizing Multiple Sequence Alignments
...ng faster algorithms and abstract views of clusters of alignments. This talk was presented at VIZBI 2011, an international conference series on visualizing biological data (http://www.v...3719 days ago
NanoPack: visualizing and processing long-read sequencing data
The NanoPack tools are written in Python3 and released under the GNU GPL3.0 License. The source code can be found at https://github.com/wdecoster/nanopack, together with links to separate scripts and their documentation. The scripts are compatible with Linux, Mac OS and the MS Windows 10 subsyste...Tags: NanoPack, visualizing, processing, long-read, sequencing, data, ngs
1955 days ago