Software packages for next gen sequence analysis
Integrated solutions * CLCbio Genomics Workb...alignments using the Smith-Waterman algorithm. Features a number of support...umina reads. Uses a Needleman-Wunsch algorithm. Can support Bis-Seq. Commerc...EQAN - A Consistency-based Consensus Algorithm for De Novo and Reference-gui...3253 days ago
List of Bioinformatics Software Tools for Next Generation Sequencing
Commercial tools Strand NGS offers man...Output: 2Kplus2 Description: algorithm searches graphs produced by d...d file, reference genome and mapping algorithm an experiment directory will...study pre-mRNA splicing; combines 12 algorithms to identify mutations’...2919 days ago
Genome Assembly Tools and Software - PART1 !!
The genome assemblers generally take a...Lightweight Resources Assembly Algorithm Lightweight resources assembly algorithm for high-throughput sequencin...ularize genome assemblies. The algorithm and benchmarks are described...es cutting-edge technology and algorithms, while also supporting and i...2696 days ago
Source Code and Pseudo Code !!
An algorithm is a procedure for solving a proble...hose actions are to be executed. An algorithm is merely the sequence of ste...uage that helps programmers develop algorithms. Pseudocode is a "text-based...e of pseudocode to elaborate on the algorithmic detail and not just cite an...2669 days ago
Awesome perl frameworks, libraries and software - PART 1
A curated list of awesome Perl frameworks, libraries and software. major/MySQLTune.... grickit/Gambot - Gambot is a modular IRC bot written in Perl. grantm/Algorithm-CouponCode - Perl librar...2499 days ago
Alignment-free sequence comparison tools available for next-generation sequencing data analysis
kallisto Transcript abundance quantification from RNA-seq data (uses pseudoali...hird-generation NGS data (can distinguish patients’ specific mutations; algorithm uses k-mers and is based...2381 days ago
2361 days ago
Single Cell RNAseq data analysis tutorial !!
A major breakthrough (replaced microarrays) in the late...SCODE: An efficient regulatory network inference algorithm from single-cell RNA-Seq duri...nce of Cellular Expression Relationships (SLICER) algorithm for inferring cell trajectori...2361 days ago
Edit distance application in bioinformatics !
There are other popular measures of edit distance, w...; print "@distances"; # prints "2 0 3" use Algorithm::LCSS qw( LCSS CSS CSS_Sorted...ein::XS are both versions of the Levenshtein algorithm that require a C compiler, bu...2351 days ago
PerlOneLiner for Bioinformatician
FILE SPACING------------ # Double space a fileperl -pe '...Calculate GCM of numbers 20 and 35 using Euclid's algorithmperl -le '$n = 20; $m = 35; ($...# Find and print all permutations of a listperl -MAlgorithm::Permute -le '$l = [1,2,3,4,5...2312 days ago