Results for "Whole genome"
Blogs
Frequently used bioinformatics tools for viral genome analysis !
IVA: accurate de novo assembly of RNA virus genomes. Hunt M, Gall A, Ong SH, Brener J, Ferns B...012). GAGE: GAGE: A critical evaluation of genome assemblies and assembly algorithms. Salzberg, S. L. et al. Genome Res. 22, 557-67 (2012). KMC:...1051 days ago
Illumina based assembly pipeline steps !
Illumina Merge re-sequenced FastQ files (cat) Read QC...; optional) Alignment-level QC (picard, SAMtools) Genome-wide and amplicon coverage QC...al variant screenshots with annotation tracks (ASCIIGenome) Intersect variants acro...881 days ago
Useful Bioinformatics Analysis Tools !
...obust relative compression of genomes with random access, Bio...Compressor of collections of genomes given in Variant Call Format...isper Experimental mapper of whole genome sequencing data. &bull..., Sz., Robust mapping of whole genome sequencing data, P...868 days ago
List of comparative genomics resources !
...species. BGDB -- Bovine Genome Database Find information ab...Reconstruction Tool Based on Whole Genomes Construct phylogenetic tree...d to biometric comparisons of whole genomes Conduct comparative b...ase dedicated to the study of genome conservation. OMA -- the...682 days ago
Online resources on must-read papers in evolutionary biology, for a literature club
1. *Nick Barton:* - The textbook "Evolution" by...609. 1b. Sachidandam et al. 2001. A map of human genome sequence variation containin...uml;bo S., 2010 A draft sequence of the Neandertal genome. Science 328: 710-722. Qua...681 days ago
Must read paper and books in evolution biology !
1. *Nick Barton:* - The textbook "Evolution" by...609. 1b. Sachidandam et al. 2001. A map of human genome sequence variation containin...uml;bo S., 2010 A draft sequence of the Neandertal genome. Science 328: 710-722. Qua...582 days ago
Common methods to discover tandem repeats
Tandem repeats are DNA...epeated in a contiguous manner in the genome. These sequences are often us...ods for discovering tandem repeats in genomes: Tandem Repeat Finder:...ehensively identify tandem repeats in genomes....428 days ago
Common steps for reads mapping !
Mapping reads to a reference genome is an essential step in many ty...o follow for mapping reads to a genome: Choose a read mapper: T...stion. Index the reference genome: Before mapping reads, the re...fying the input data, reference genome, and output file format....428 days ago
Steps to find palindrome in genomes !
Palindromes are...rward. They can be present in genomes and have various biological...or discovering palindromes in genomes: Direct sequence search...tify palindromic regions in a genome. It involves plotting the gen...By mapping these reads to the genome, palindromic regions can be i...428 days ago
Entire Human Genome Sequencing !
Cost-effective whole human genome sequencing has revolutionized the landscape of genetic research and per...nies: https://mynucleus.com/ https://myome.com/ https://nebula.org/whole-genome-sequencing-dna-test/38 days ago
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