Results for "Whole genome re-sequencing"
Top-level pages
Genome Assembly Tools and Software - PART1 !!
...er designed to assemble virus genomes that have no repeat sequence...Celera Assembler 8.3 – Whole Genome Shotgun Assembler Ce...fragmentary data produced by whole-genome shotgun sequencing. The...Phusion 2.1c – Assembly Genome Sequences from Whole Genome S...2687 days ago
Quick next generation sequencing (NGS) terms definition
fragment size: the Illumina WGS protocol generates paired-end reads from both end...concordant if they can be mapped to the reference genome as “expected”: (a...p;a read that can only be mapped to the reference genome by bre...2523 days ago
Awesome perl frameworks, libraries and software - PART 1
A curated list of awesome Perl frameworks, libraries and software. major/MySQLTuner-perl - MySQLTuner is a script written in Perl that will assist you with your My...2490 days ago
Alignment-free sequence comparison tools available for next-generation sequencing data analysis
...SNPs (dbSNP and Affymetrix's Genome-Wide Human SNP Array) from ra...., ONT or PacBio reads, draft genomes) Software (Perl) https://g...of sequencing errors in raw, whole genome sequencing reads (k-mer...embled raw sequence data from whole genome sequencing projects; pr...2372 days ago
- When you have both Illumina and Nanopore data, then SPAdes remains a good option for hybrid assembly - SPAdes was...des.py will show you the options: spades.py This produces: SPAdes genome assemb...
2352 days ago
Single Cell RNAseq data analysis tutorial !!
A major breakthrough (replaced microarrays) in the late 00’s and has been widely used since Measures the...and reveal cell-type-specific expression changes in type 2 diabetes http://genome.cshlp....2352 days ago
- RNA-sequencing (RNA-seq) has a wide variety of applications, but no single analysis pipeline can be used in all cases. We review all of the major steps in RNA-seq data ana...
2352 days ago
Tools for bacterial whole genome annotation
RAST – Web tool (upload contigs), uses the subsyst...ation (if you have only a few genomes to annotate). Prokka &...y useful if you have loads of genomes or need to annotate a pangen..., as well as other functional genome units such as structural RNAs...2333 days ago
BBSplit: Read Binning Tool for Metagenomes and Contaminated Libraries
BBSplit internally uses BBMap to map reads to multiple genomes at once, and determine which genome they match best. This is different than with ordinary mapping. If a genome (say,...2315 days ago
List of visualization tools for genome alignments
Genome browsers are useful not only for showing final results bu...need publication ready figure of genomes. Following are the list of genome alignment visualization tools...ation information of a reference genome http://bioinformatics.zj.cn/...and visualizing sequenced human genomes http...2285 days ago
