Results for "Whole genome resequencing"
Blogs
Frequently used bioinformatics tools for viral genome analysis !
IVA: accurate de novo assembly of RNA virus genomes. Hunt M, Gall A, Ong SH, Brener J, Ferns B, Go...1 (2012). GAGE: GAGE: A critical evaluation of genome assemblies and assembly algorithms. Salzberg, S. L. et al. Genome Res....1052 days ago
Illumina based assembly pipeline steps !
Illumina Merge re-sequenced FastQ files (cat) Read QC (FastQC) Adapter trimming (f...optional) Alignment-level QC (picard, SAMtools) Genome-wide and amplicon coverage QC...l variant screenshots with annotation tracks (ASCIIGenome)...882 days ago
Useful Bioinformatics Analysis Tools !
...Compressor of collections of genome sequences. • ...obust relative compression of genomes with random access, Bio...Compressor of collections of genomes given in Variant Call Format...isper Experimental mapper of whole genome sequencing data. &bull...868 days ago
List of comparative genomics resources !
...species. BGDB -- Bovine Genome Database Find information ab...Reconstruction Tool Based on Whole Genomes Construct phylogenetic tree...d to biometric comparisons of whole genomes Conduct comparative b...risons of Multiple Vertebrate Genomes Access to whole genome alig...682 days ago
Online resources on must-read papers in evolutionary biology, for a literature club
1. *Nick Barton:* - The textbook "Evolution" by Nick Barton, with resources fo...09. 1b. Sachidandam et al. 2001. A map of human genome sequence variation containin...ml;bo S., 2010 A draft sequence of the Neandertal genome. Scie...682 days ago
Must read paper and books in evolution biology !
1. *Nick Barton:* - The textbook "Evolution" by Nick Barton, with resources fo...09. 1b. Sachidandam et al. 2001. A map of human genome sequence variation containin...ml;bo S., 2010 A draft sequence of the Neandertal genome. Scie...582 days ago
Common methods to discover tandem repeats
Tandem repeats are DNA sequences that are repeated in a contiguous manner in the genome. These sequences are often us...ds for discovering tandem repeats in genomes: Tandem Repeat Finder:...hensively identify tandem repeats in genomes....428 days ago
Common steps for reads mapping !
Mapping reads to a reference genome is an essential step in many types...s to follow for mapping reads to a genome: Choose a read mapper: T...question. Index the reference genome: Before mapping reads, the re...ecifying the input data, reference genome, and...428 days ago
Steps to find palindrome in genomes !
Palindromes are sequences of nucleotides that...rward. They can be present in genomes and have various biological...or discovering palindromes in genomes: Direct sequence search...tify palindromic regions in a genome. It involves plotting the gen...428 days ago
Entire Human Genome Sequencing !
Cost-effective whole human genome sequencing has revolutionized the landscape of genetic research and personal...w companies: https://mynucleus.com/ https://myome.com/ https://nebula.org/whole-genome-seque...38 days ago
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