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Bioinformatics tools developed for Oxford Nanopore data analysis !
...rd Nanopore data BWA Fast nanopore data tuned alignment tool https://github.com/l...github.com/isovic/graphmap LASTNanopore tuned alignment toolhttp://last.cbrc.jp/...ers for Oxford Nanopore MinION long reads LQSDALIGNER, Celera OLC Nanocorrect, Na...2326 days ago
CoronaVIR: Computational Resources on Novel Coronavirus (SARS-CoV-2 or COVID-19)
Aim of this web site is to facilitate the scientific community to fight against severe pandemic disease COVID-19 caused by SARS-CoV-2. Here, We have collected and or...1110 days ago
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Bioinformatics Courses Around the World
...mann Institute of Science, Israel) Rutgers University, PhD Program in Computational Biology (Newark, New Jersey) Sequence Alignment and Modeling System ...3949 days ago
Vaccination can be dangerous sometimes !!!
It is always believed that vaccination is permanent cure from specific diseases, but recent finding suggest something else. A group of scientist led by Surender Khuran...3901 days ago
Programming language to build synthetic DNA
A team led by Georg Seelig (http://homes.cs.washington.edu/~seelig/index.html) at University of Washington has developed a programming language for chemistry...3876 days ago
Bioinformatician become producer/director !!!
...e jayenge Raju ban gaya Genefinder. Har Ligand jo dock karega. Alignment to hona hi tha. Mera seq...Se Program Tak Haan Maine Bhi ClustalW Kiya Hai GeneScan Karke Dekho Alignment Apna Sequence Parayi *...3925 days ago
Calculate some statistics for a DNA alignment with Perl
use Bio::AlignIO; use Bio::Align::DNAStatistics; my $stats = Bio::Align::DNAStatistics->new(); my $alignin =...'t/data/insulin.water'); my $aln = $alignin->next_aln; my $jcmatrix...ous substitutions ## my $in = Bio::AlignIO->new(-format => 'fasta',...2655 days ago
Biological Sequence handling with Perl !
...quence::Generic; use Sequence::Nucleotide::Subsequence; use Sequence::Alignment; use Carp; use strict...return ($self->length-$pos,$self->length-$pos-3*length($max)); } sub align { my $self = shift;...2187 days ago
Which of the following programming language is best for a bioinformatics beginner?
...o learn a programming language which is compatible with most bioinformatics tools or software. I basically want to do de-novo assembly, map reads, align reads, and expression analysi...3537 days ago
Tryst with a Bioinformatician # Dr Altan Kara
Dr Altan Kara is a Bioinformatics specialist at the faculty of Gene Engineering and Biotechnology Institute at TUBITAK MAM Research Center. His research intere...2368 days ago
Software packages for next gen sequence analysis
Integrated solutions * CLCbio Genomics Workbench - de novo and reference assembly of Sanger, Roche FLX, Illumina, Helicos, and SOLiD data. Commercial next-gen-seq software that extends the CLCbio Main Workbench software. Includes SNP detection, CHiP-seq, browser and other features. Commercial. Wi...Tags: Bioinformatics, Computational Biology, Education, Assemblied, Sequence, Genome, Align, Software, SNP
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Comment on "Mugsy: multiple whole genome alignment tool"
...genomes genome1.fasta genome2.fasta genome3.fasta This example will align three genomes and output a fi...roblems. View or parse MAF output The output of Mugsy is Multiple Alignment Format (MAF).One option f...1291 days ago
Comment on "Setting up autoConTAMPR !"
...phyml (2:20120412-2) ...Setting up primer3 (2.3.6-1) ...Setting up probalign (1.4-3) ...Setting up probcon...ee (10.00.r1613-1) ...Setting up tigr-glimmer (3.02-3) ...Setting up tm-align (20130511+dfsg-1) ...Setting...1448 days ago