RepeatMasker compatible blast tool
...justed scoring. Cross_match is Phil Green's seeded smith-waterman search algorithm. Support for cross_match-like masklevel filtering. https://anaconda.org/bioconda/rmblast1986 days ago
ncbi-datasets-cli -- Quickstart: command line tools !
...ins of life from NCBI. Use dataformat to convert metadata from JSON Lines format to other formats. Conda download: https://anaconda.org/conda-forge/ncbi-datasets...891 days ago
Creating conda environment for python2.7
...or information on specifying a different path. Use the Terminal or an Anaconda Prompt for the following step...se conda ## Package Plan ## environment location: /home/urbe/anaconda3/envs/py27 added / updated s...2200 days ago
Bash commandline to install Anaconda !
...mp/ $ curl -O https://repo.anaconda.com/archive/Anaconda3-2019.03-Linux-x86_64.sh...============================ Anaconda End User License Agreement =....21.0-py37_0 ... installing: anaconda-client-1.7.2-py37_0 ... inst...0.9.0-py37_0 ... installing: anaconda-2019.03-py37_0 ... installat...1566 days ago
Bash command to install Miniconda !
...se) [wsu29@bladeamd-2 tmp]$ wget https://repo.anaconda.com/miniconda/Miniconda3-late..._64.sh --2020-02-01 13:25:25-- https://repo.anaconda.com/miniconda/Miniconda3-latest-Linux-x86_64.sh Resolving repo.anaconda.com... 104.16.130.3, 104.16.1...1566 days ago
LINKS scaffolder bloomfilter setting !
➜ bin git:(master) ✗ ls -l total 68 drwxrwxr-x 3 urbe urbe 4096 Jun 15 12:15 lib -rwxrwxrwx 1 urbe urbe 65141 Jun 15 17:13 LINKS ➜ bin git:(master) ✗ pwd /home/urbe/Tools/LINKS_1.8.6/bin ➜ bloomfilter git:(master) ✗ swig -Wall -c++ -perl5 BloomFilter.i ➜ bloomfilter git:(master) ✗...Tags: LINKS, scaffolder, genome, Perl, Perl_Gthr_key_ptr, setting, anaconda
2161 days ago
Installing Salmon for Trinity !
➜ trinityrnaseq-Trinity-v2.6.6 git:(master) ✗ conda install salmon Solving environment: done ## Package Plan ## environment location: /home/urbe/anaconda3 added / updated specs: - salmon The following packages will be downloaded: package | ...Tags: salmon, NGS, Trinity, Conda, Anaconda
2143 days ago
Comment on "How to install Perl modules manually, using CPAN command, and other quick ways"
If you are on Conda, you can try installing cpamn https://anaconda.org/bioconda/perl-app-cpanminus and then cpanm install <name>948 days ago