Results for "anchors"
Bookmarks
...gram that can simultaneously scan multiple genomes to identify homologous chromosomal regions and subsequently align these regions using genes as anchors. This is the toolset for gene...2710 days ago
- ...t are orthologous in multiple genomes as map "anchors." Given K genomes, the steps...es in this graph. These cliques are potential anchors to be used in the map. Start...ed to output the exact genomic coordinates of anchors within each orthologous segme...
2664 days ago
- +3 more Bookmarks
Top-level pages
Commercial and public next-gen-seq (NGS) software
...e novo and reference assembly of Illumina, SOLiD and Roche FLX data. Uses a novel Condensation Assembly Tool approach where reads are joined via "anchors" into mini-contigs before ass...3538 days ago
Software packages for next gen sequence analysis
...e novo and reference assembly of Illumina, SOLiD and Roche FLX data. Uses a novel Condensation Assembly Tool approach where reads are joined via "anchors" into mini-contigs before ass...3261 days ago
Video
Bioinformatics -- Understanding of living systems through information science
...developed by the Sakakibara Lab calculates homologous sequences called anchors, which are conserved between species. If the genome is considered as a long text, then anchors can be thought of as words....3936 days ago
Tags
- AnchorWave (Anchored Wavefront Alignment) identifies collinear regions via conserved anchors (full-length CDS and full-length exon have been implemented currently) and breaks collinear regions into shorter fragments, i.e., anchor and inter-anchor intervals. By performing sensitive sequence alignm...
Tags: AnchorWave, Anchored, Wavefront, Alignment, collinear, regions, conserved, anchors, CDS, exon, currently, breaks, collinear, regions, fragments, anchor, inter-anchor, intervals
821 days ago
Comments
Comment on "GraphMap - A highly sensitive and accurate mapper for long, error-prone reads"
...th end-to-end extension. Uses Myers' global alignment to align between anchors. anchorgotoh - anchored alignment with Gotoh. Uses Gotoh global alignment to align between anchors. [anchor] -w, --approach STR...2311 days ago
Comment on "Tools to detect synteny blocks regions among multiple genomes"
Thanks for such an informative blog. I notice MCScan is missing. MCScan is an algorithm able to scan multiple genomes or subgenomes in order to identify putative homologous chromosomal regions, and align these regions using genes as anchors. More at http://www.ncbi.nlm.nih.gov/pubmed/222176003692 days ago
