CAT/BAT: tool for taxonomic classification of contigs and metagenome-assembled genomes (MAGs)
Contig Annotation Tool (CAT) and Bin Annotation Tool (BAT) are pipelines for the taxonomic classification of long DNA sequences and metagenome assembled genomes (MAGs/bins) of both known a...1456 days ago
ShinyGO v0.61: Gene Ontology Enrichment Analysis + more
...o reviewers). Interactive networks and much more. 5/20/2019: V.0.60, Annotation database updated to Ensembl 9...rms and othe pathways for over 315 plant and animal species, based on annotation from Ensembl (Release 96), En...1440 days ago
Liftoff: an accurate tool that maps annotations in GFF or GTF between assemblies
Liftoff, an accurate tool that maps annotations in GFF or GTF between assemblies of the same, or closely...is a standalone tool that takes two genome assemblies and a reference annotation as input and outputs an annot...1413 days ago
Predict Gene Ontology with sequences !
PANNZER (Protein ANNotation with Z-scoRE) is a fully automated service for functional annotation of prokaryotic and eukaryotic proteins of unknown function. The tool is designed to predict the functional descri...1405 days ago
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Liftoff: An accurate GFF3/GTF lift over pipeline
Liftoff is a tool that accurately maps annotations in GFF or GTF between assemblies of the same, or closely-re...is a standalone tool that takes two genome assemblies and a reference annotation as input and outputs an annot...1241 days ago
maftools : Summarize, Analyze and Visualize MAF Files
With advances in Cancer Genomics, Mutation Annotation Format (MAF) is being widely accepted and used...onsisting of somatic variants are stored in the form of Mutation Annotation Format. This package attempts...1237 days ago
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QuasR: Quantification and annotation of short reads in R
The QuasR package (short for Quantify and annotate short reads in R) integrates the functionality of several R packages (such as IRanges (Lawrence et al. 2013) and Rsamto...1004 days ago