Results for "assembled"
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Comment on "Short-read assembly using Spades !"
...astq Here, "output_directory" is the name of the directory where the assembled genome will be saved, "forwar...After running SPAdes, the next step is to evaluate the quality of the assembled genome. This can be done usin...430 days ago
Comment on "Short-read assembly using Spades !"
...nd <output_dir> with the name of the output directory where the assembled contigs will be saved. Che...Once SPAdes has finished running, check the output directory for the assembled contigs. The contigs will be...435 days ago
Comment on "Coronavirus Resources !"
Raw and assembled sequences related to the COVID-19 outbreak, including outbreak isolates and records relating to coronavirus biology. Includes extensive sampling information. https://www.covid19dataportal.org/sequences?db=embl1438 days ago
Comment on "HALC: High throughput algorithm for long read error correction"
Inputs Long reads in FASTA format. Contigs assembled from the corresponding short reads in FASTA format. The initial short reads in FASTA format (only for -ordinary mo...2106 days ago
- ...ossible to run multiple assemblies in the same directory. The genome size should be your best guess of the haploid genome size of what is being assembled. It is used primarily to esti...
2113 days ago
Comment on "Running Trinity on RNA-seq !"
...rsue to explore aspects of the biology of your organism based on your assembled transcripts and the input RNA...te the transcripts using Trinotate. If your organism has an assembled genome, consider using the Tr...2137 days ago
- ...>, with most files named using the -p <assembly-prefix>. The genome size is your best guess of the genome size of what is being assembled. It is used mostly to comp...
2189 days ago
- ...nd reads localized on gaps in scaffolds are assembled and gaps are closed. ***...OUTPUT FILES PREFIX_contig.fa : assembled contiguous sequences P...T FILES PREFIX_scaffold.fa : assembled sequences that include gaps('...
2813 days ago
Comment on "Does anyone have Nanopore latest updates?"
Researchers in Canada and the U.K. have for the first time sequenced and assembled de novo the full genome of a living organism, the bacteria Escherichia Coli, using Oxford Nanopore's...3260 days ago
Comment on "Does anyone have Nanopore latest updates?"
Improved data analysis for the MinION nanopore sequencer http://www.nature.com/nmeth/journal/vaop/ncurrent/full/nmeth.3290.html A complete bacterial genome assembled de novo using only nanopore sequencing data http://biorxiv.org/content/early/2015/02/20/0155523372 days ago
