Results for "benchmarking and designing tools"
Blogs
List of Research Institutes in India (Biological Sciences/ Biotechnology)
.../Research Areas: Evolutionary and organismal biology, molecular...nstitute of Science Education and Research–BhopalGovindpu...ac.in/ Institute of Genomics and Integrative BiologyDelhi Univ...amp; cultivation of medicinal and aromatic plants, post harvest techn...rsion, analysis of pollutants and w...2365 days ago
String graph based genome assembly software and tools !
In graph theory, a string graph is an inter...not rely on de Bruijn graphs, and instead employs a different g...owing are the genome assembly tools based on string graph: 1.S...e third phase uses paired end and/or ma...bler has been assessed on a standard benchmark, showing that fast...2330 days ago
Bioinformatics tools developed for Oxford Nanopore data analysis !
MinION is the only portable real-time device for DNA and RNA sequencing. Each con...(OLC), de Bruijn graph (DBG), and string graph. List of analysis tools developed for Oxford Nanopo.../bwa GraphMapMapper for long and error...NanopolishNanopore analysis and genome assembly softwarehttps:/...2322 days ago
Popular bioinformatics educational resources !
...i.a-star.edu.sg Bio research and development. Has course information and research information. Isb-si...g, news and events, resources and support, director's message,...From the Biology department and in cooperation with Boston Univ...programming for bioinformatic tools.2194 days ago
Installing Bandage on Ubunty !
The following instructions successfully build Bandage (https://github.com/rrwick/Bandage ) on a fresh installation...qt5widgets5 libqt5xml5 libwayland-binli...ntu xenial/main amd64 libxcb-randr0-dev amd64 1.11.1-1ubuntu1 [18...pdates/main amd64 qtbase5-dev-tools amd64 5.5.1+dfsg-16ubuntu7.5...2190 days ago
- ...tatus: executing depfiles commands make[1]: Entering directory '/home/urbe/Tools/trinityrnaseq-Trinity-v2.6....ntering directory '/home/urbe/Tools/tri...ng: comparison between signed and unsigned integer expressions [-...orking directory: "/home/urbe/Tools/trinityrnaseq-Trinity-v2.6.6/...
2134 days ago
List of motif discovery tools !
...es of key amino acid residues and map them on protein structure...roteins. EXPASY Proteome Tools Col...ier Identify protein family (and DNA) domains, patterns, motifs,...pattern-recognition receptors and their ligands. PatMatch --...collection of bioinformatics tools at this portal site. T-R...1994 days ago
CANU genome assembly parameters !
Choose the appropriate parameters to run Canu and run it. The assembly will tak...ptional, symbol | stands for "or". usage: canu [-c...ty assembly, example of a command that was used for testing can...ng standard UNIX command line tools. More at https://canu.r...1946 days ago
List of tools frequently used while genome assembly
List of tools frequently used while genome assembly: I have use...7.12-r1039) I have used the following polishing tools Racon (v. not availab...olish (v. 0.8.3) I have used the following tools to assess genome assembly cha...1931 days ago
Software for genome assembly !
List of bioinformatics tools/Software Website References for genome assembly: 1 Falco...https://github.com/bcgsc/arcs 6 Redundans reduction and scaff...ingle copy gene markers http://busco.ezlab.org/ 10 Bandage graph assembly viewer...1345 days ago
