KAT: a K-mer analysis toolkit to quality control NGS datasets and genome assemblies
KAT is a suite of tools that analyse jellyfish hashes or sequen...nce file. blob: Given, reads and an as...ded hash. plot: Plotting tools. Contains several plotting tools to visualise K-mer and compare distributions. The foll...ief details of how to install and use KAT. For more extensive doc...1997 days ago
Merqury: reference-free quality and phasing assessment for genome assemblies
Often, genome assembly projects have illumina whole genome sequencing reads available fo...uality without the need of a high quality reference. Merqury provides a set of tools for this purpose. https://gi...1444 days ago
GFinisher: a new strategy to refine and finish bacterial genome assemblies
GFinisher is an application tools for refinement and finalization of prokaryotic genomes assemblies using the bias of GC Skew to identify assembly errors and organizes the contigs/scaffol...2125 days ago
2113 days ago
mmgenome: Tools for extracting individual genomes from metagneomes
The mmgenome toolbox enables reproducible extraction of individual genomes from metagenome...ctions. Thereby making the whole process of binning easy and at th...ates effortless integration with additional data sources and h...2111 days ago
NanoPack: visualizing and processing long-read sequencing data
The NanoPack tools are written in Python3 and released under the GNU GPL3.0 License....ogether with links to separate scripts and their...ipts are compatible with Linux, Mac OS and the MS Windows...noplot.bioinf.be and command line tools. https://academic.oup....2110 days ago
LRCstats: a tool for evaluating long reads correction methods
LRCstats is an open-source pipeline for benchmarking DNA long read correction algorithms for long reads outputted by third generation sequencing technology such as machines...2098 days ago
2084 days ago
funannotate: Eukaryotic Genome Annotation Pipeline
Funannotate is a genome prediction, annotation, and comparison software package. It was originally w...is software package was to be able to accurately and easil...genome for submission to NCBI GenBank. Existing tools (such as Maker) require signi...2070 days ago
2069 days ago