Results for "binding"
Top-level pages
...cs (MD) simulations. Also free energy differences (for example between binding energies of different protein...nation. Drug design exploits the knowledge of the 3D structure of the binding site (or the structure of the...3966 days ago
Useful Publications and Websites for Deep Sequencing Data Analysis
...tions. Furey, Nat Rev Genet 13: 840–852, 2012 Publisher Web Site MuMoD: a Bayesian approach to detect multiple modes of protein–DNA binding from genome-wide ChIP data. N...3798 days ago
List of In-silico Binding Site Prediction Tools
...on to systematically identify binding sites of proteins. In additio...ister of structurally similar binding sites sharing atomic similari...hm that detects common ligand binding sites in a set of evolutionar...mparative analyses of similar binding-site geometry by examining in...3763 days ago
Next generation sequencing in R or bioconductor environment
...tif that may function as transcription factor binding site. The algorithm extends t...loped for detecting transcription factor (TF) binding sites in a large number of en...is a peak calling package for identifying DNA binding sites of proteins in ChIP-Seq...3643 days ago
Commercial and public next-gen-seq (NGS) software
...estimates, and uses it to improve the spatial resolution of predicted binding sites. MACS also uses a dynam...ChIP-Seq data relative to controls. The first pass identifies putative binding sites and compensates for var...3538 days ago
Software packages for next gen sequence analysis
...estimates, and uses it to improve the spatial resolution of predicted binding sites. MACS also uses a dynam...ChIP-Seq data relative to controls. The first pass identifies putative binding sites and compensates for var...3261 days ago
Binding Site Prediction in Protein !
...pockets. PocketPicker available as a plugin for PyMOL Binding Site Prediction ConSurf &nb...s from those due to functional restraints. Ligand Binding Sites 3DLigandSite...2221 days ago
List of Bioinformatics Software Tools for Next Generation Sequencing
...a simple tab delimited file (.sft, .tsv) Genome Track Analyzer Description: compares genome tracks; allows user to compare DNA expression/binding; Input: multiple: SGR/TXT, B...2927 days ago
Tools for Searching Repeats And Palindromic Sequences
...uence 5' CGAAGC 3' that, when reversed, still reads CGAAGC. Palindromes are important sequences within nucleic acids. Often they are the site of binding for specific enzymes (e.g., r...2230 days ago
Awesome perl frameworks, libraries and software - PART 1
...elenium-Remote-Driver - Perl Bindings to the Selenium Webdriver se...PerlRedis/perl-redis - Perl binding for Redis database pplu/aws-...se/FFI-Platypus - Write Perl bindings to non-Perl libraries with F...n/perl-Redis-obsolete - perl binding for Redis database - latest d...2508 days ago
