SEX-DETector: A Probabilistic Approach to Study Sex Chromosomes in Non-Model Organisms
SEX-DETector is a probabilistic method that relies on RNAseq data from a cross (parents and progeny of each sex) to infer autosomal and sex-linked genes (genes located o...2164 days ago
BEAP: Blast Extension and Assembly Program
The Blast Extension and Assembly Program (BEAP) is a computer program that uses a sh...al analysis, or at least to obtain neighboring regions of the segment for SNP discovery and linkage disequilibrium an...2153 days ago
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NextSV: a meta-caller for structural variants from low-coverage long-read sequencing data
NextSV, a meta SV caller and a computational pipeline to perform SV calling from low...Users can easily perform downstream annotation using ANNOVAR and disease gene discovery using Phenolyzer. &n...2096 days ago
CSBFinder: Discovery of colinear syntenic blocks across thousands of prokaryotic genomes
CSBFinder is a standalone Desktop java application with a graphical user interface,...executed via command line. CSBFinder implements a novel methodology for the discovery, ranking, and taxonomic distr...2017 days ago
1929 days ago
HumCFS: a database of fragile sites in human chromosomes
Fragile sites are specific chromosomal region that exhibit an increased frequency of...mosdomal breakge when cells are exposed to replicative stress. Since from the discovery of chromosomal fragile sites/...1838 days ago
TRITEX sequence assembly pipeline for Triticeae genomes
The pipeline is open-source and hosted in a public Bitbucket repository. TRITEX has been run on highly inbred genotypes of barley (Hordeum vulgare), tetraplo...1718 days ago