Tools to detect synteny blocks regions among multiple genomes
...eate images to show the relationship between genetic maps and large sequences (scaffolds, chromosomes, BACs, etc.). Based on tab – delimited BLAST results and some formulas, a...2607 days ago
Basic command-line to run BLAST
...programming language and NCBI BLAST+. Get Data Grab some da...> cow.small.faa BLAST Now we can blast these two c...-version] Now we can run the blast job. We will use blastp, whic...RIPTION Nucleotide-Nucleotide BLAST 2.7.0+...2241 days ago
Popular bioinformatics educational resources !
...tational biology. Geospiza.com/education/ Instructional materials for teaching bioinformatics. These include animated tutorials on topicssuch as BLAST, finding mutations in a prote...2190 days ago
Installing Bandage on Ubunty !
...✗ cd Bandage ➜ Bandage git:(master) lsBandage.pro BandageTests.pro blast build_scripts command_line CO...outdialog.ui -o ui_aboutdialog.h/home/urbe/anaconda3/bin/uic ui/enteroneblastquerydialog.ui -o ui_enteroneb...2186 days ago
Ancient whole genome duplication (WGD) detection tools !
...ftware. wgd depends on the following software BLASTMCLMUSCLE/MAFFT/PRANKPAMLPhyML...ith bioconda conda create -n wgd python=3.5 blast mcl muscle mafft prank paml f...ads 80 Sspon_cds.out/Sspon.v20190103.cds.fasta.blast.tsv.mcl Sspon.v20190103.cds.f...1153 days ago
Illumina based assembly pipeline steps !
...De novo assembly Primer trimming (Cutadapt; amplicon data only) Choice of multiple assembly tools (SPAdes || Unicycler || minia) Blast to reference genome (blastn) Contiguate assembly (ABACA...874 days ago
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