Awesome perl frameworks, libraries and software - PART 1
...言或系统调用 chromatic/modern_perl_book - Modern Perl: the book gugod/App-perlbrew - Manage perl installations in your $HOME muennich/urxvt-perls&n.../perl-jam - Perl Jam - a book about organising conferences typester/perldojo - online perl testing! tsee/ZeroMQ-...2491 days ago
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Tools for bacterial whole genome annotation
RAST – Web tool (upload contigs), uses the subsystems in the SEED dat... functional profiling and pathway analysis of your...tabase. MAKER is available for download and can be tested online via the MAKER Web Annotation...2334 days ago
PerlOneLiner for Bioinformatician
FILE SPACING------------ # Double space a fileperl -pe '$\="\n"'perl -pe 'BEGIN { $\=...= 1; $f *= $_ for 1..5; print $f' # Calculate greatest common divisor (GCM)perl -MMa...> length($l); END { print $l }' # Print the shortest l...2304 days ago
Awk for Bioinformatician and computational biologist
Awk is a programming language which allows easy manipulation of...llowing contents: $ cat data/test.tsvcontig1 ACTGTCTGTCACTGTGTT...file. $ awk '{print;}' data/test.tsvcontig1 ACTGTCTGTCACTGTGTT...2;}END{print "-------"}' data/test.tsvHeader,Sequencecontig1,ACT...i) print j"<="i[j]}' data/test.t...2282 days ago
Python learning resources for bioinformatics and computational biologist !
Python is a general-purpose language, which means it can be used...;- Kracekumar (2.7.3) Invent Your Own Computer Games With Pytho...HTML, TEXT) (3.x) Python Cookbook&...;(2.6 - 2.x & 3.1 - 3.x) Test-Driven Web Development with P...Wierzbicki (2.5) The Little Book of Python Anti-Patterns (S...2257 days ago
Some useful Bioinformatics links
Reference-free prediction of rearrangement breakpoint reads | Bioinform...github.io/Bandage/ Codon Optimization OnLi...tion in R http://zuguang.de/circlize_book/book/introduction.html#a-qiuck-gla...tion http://cgat.readthedocs.io/en/latest/recipes/metagenome_contigs_kmer...2244 days ago
Installing Bio::SCF perl module
...his http://bioinformaticsonlin...SET_BITS=64 -c -o example64.o test/example.cgcc -O3 -D_LARGEFILE...ion.Tpo" -c -o compression.o `test -f '../ztr/compression.c' ||...able.Tpo" -c -o hash_table.o `test -f '../utils/hash_table.c' ||...erl Makefile.PL []Checking if your kit is complete...Looks goodGen...2220 days ago
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