2032 days ago
2017 days ago
Installing Platypus on Ubuntu !
(py27) ➜ Tools git:(master) ✗ git clone https://github.com/andyrimmer/Pl...elease sanityChecks.py scripts src test ➜ Platypus git:(master) s.../man/man5 /usr/local/lib/pkgconfig if test -n ""; then mkdir -p -m 755 ;...bgzip htsfile tabix /usr/local/bin if test -...2017 days ago
2016 days ago
Finding Kmers from fasta sequence file
Save it in sample.fa >test TAATGCCATGGGATGTT jellyfish count -m 3 -s 100000 sample.fa -o sample.jf jellyfish dump -c sample.jf It return TGT 1 GAT 1 GGG 1 GGA 1 CAT 1 TGC 1 TAA 1 GCC 1 CCA 1 GTT 1 TGG 1 ATG 3 AAT 11970 days ago
Install Samtools, Bcftools and htslib on Ubuntu !
#Inspired from online search sudo apt-get update sudo apt-get install gcc sudo apt-get install make sudo apt-get install libbz2-dev sudo apt-get install zlib1g-dev sudo...1556 days ago
Bash commandline to install Anaconda !
#The line begins with $ are the commands $ mkdir tmp $ cd tmp/...ib-1.3.2-py37_0 ... installing: testp...-2.3.1-py37_0 ... installing: pytest-4.3.1-py37_0 ... installing:....0.0-py37_0 ... installing: notebook-5.7.8-py37_0 ... installing:...o take effect, close and re-open your c...1553 days ago
Pack a perl program with their dependencies on Ubuntu !
...0.1) ... #you can find the test script web.pl at https://bioinformaticsonline.com/snippets/view/41440/per...ne appointment portal for all your medical needs like, online doctor appointment, Online booking on of lab tests, creating your online medical records for easy...1509 days ago
1440 days ago
Command to sort the bed file !
#Command to sort the bed file sort -V -k1,1 -k2,2 test.bed1387 days ago