Results for "bwa"
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Nucl2Vec: Local alignment of DNA sequences using Distributed Vector Representation
...ignment.With our new approach we have reduced computation cost forlocal alignment , while achieving accuracy comparable to existingdefacto standard BWA-MEM tool. https://prakharg2...1153 days ago
- ...alling and annotation pipeline developed at the Victorian Life Sciences Computation Initiative (VLSCI), University of Melbourne. It is based around BWA, GATK and ENSEMBL and was ori...
3660 days ago
- ...HybPiper pipeline starts with high-throughput sequencing reads (for example from Illumina MiSeq), and assigns them to target genes using BLASTx or BWA. The reads are distributed to...
2746 days ago
- ...a fast and flexible hash-based aligner. YAHA is as fast and accurate as BWA-SW at finding the single best...the query. We show that YAHA detects more breakpoints in less time than BWA-SW across all SV classes, and...
2669 days ago
- ...uence is called mapping. The most used mappers of DNA-seq data are BWA and Bowtie for...y can take in, how fast and how accurate they are. Bowtie is faster than BWA, but looses some sensitivity...
2567 days ago
ONT assembly and Illumina polishing pipeline
...Polish canu contigs using racon (optional). Map a paired-end Illumina dataset onto the contigs obtained in the previous steps using BWA mem. Perform correction...2362 days ago
Seal: SEquence ALignment evaluation suite
...orrectly mapped. Computing run times and measures of accuracy. Seal has interfaces to evaluate the following software packages: Bowtie BWA MAQ mrFAST mrsFAST Novoal...2321 days ago
proovread : large-scale high-accuracy PacBio correction through iterative short read consensus
...nfigure supports various types of dat HiSeq/MiSeq (100-500bp) Unitigs 454, ... proovread maps high coverage data to pacbio reads (bwa mem, blasr, daligner) in mult...2319 days ago
SEX-DETector: A Probabilistic Approach to Study Sex Chromosomes in Non-Model Organisms
...p;for the assembly. Trinity components should be merged with cap3. Our code to perform the merging is available here. We recommend BWA for mapping of the reads...2173 days ago
SvABA: Genome-wide detection of structural variants and indels by local assembly
...ion of SGA (String Graph Assembler) by Jared Simpson, and BWA-MEM by Heng Li. Contigs...;rules. These contigs are then immediately aligned to the reference with BWA-MEM and parsed to identify va...1937 days ago
