1140 days ago
Bioinformatics PhDs - Cover Letter
...pastures as soon as their third book has been published and Yale comes calling. They often don't seem...l and professional, and, perhaps more to the point, Yale rarely "comes calling." An even greater burde...3366 days ago
Calling narrow and broad peaks from ChIP-Seq data
...scription factor (narrow peaks) and enriched regions of histone modification (broad peaks) from ChIP-Seq data.Read the benchmarking study on Calling narrow and broad peaks from C...3198 days ago
DAVI: Deep learning-based tool for alignment and single nucleotide variant identification
DAVI consists of models for both global and local alignment and for variant calling. We have evaluated the performance of DAVI against existing state-of-the-art tool sets and found th...1147 days ago
Next Generation Sequencing (NGS) Tutorials
...eqFlow: Workflows for RNA-Seq data analysis DOI: 10.1093/bioinformatics/btr441 ngs_backbone: a pipeline for read cleaning, mapping and SNP calling using Next Generation Sequenc...3488 days ago
Bioinformatics approach to Boar Taint
...ort reads generated from these samples mapped to Sus Scrofa version 10.2 reference assembly using Bowtie2. Alignment file then used for calling SNPs and InDels inside previo...3790 days ago
Awesome perl frameworks, libraries and software - PART 2
...sstrigler/chatbot - a jabber channel bot written in perl softlayer/softlayer-api-perl-client - A set of Perl libraries that assist in calling the SoftLayer API. singingfi...2495 days ago
Useful Publications and Websites for Deep Sequencing Data Analysis
...e for full-genome alignment & comparisons] Searching for SNPs with cloud computing. Langmead et al, Genome Biol 10(11):R134, 2009 Full Text Calling SNPs without a reference sequ...3780 days ago
Next generation sequencing in R or bioconductor environment
...The chipseq package combines a variety of HT-Seq packages to a pipeline for ChIP-Seq data analysis. Documentation BayesPeak BayesPeak is a peak calling package for identifying DNA b...3625 days ago
3547 days ago
Roche has acquired Bina Technologies !!!
...sed in California. The biotech’s first product was the Bina Box, a platform for secondary genomic analysis, sequence alignment, and variant calling, but since 2012, it has devel...3414 days ago
Research Associate @ INDIAN INSTITUTE OF SPICES RESEARCH
...mination Hall after 10.00 A.M. 6. Candidates who secure the minimum marks prescribed by the Institute in written test only will be eligible for calling for the interview. The number...3770 days ago
Research Associate @ INDIAN INSTITUTE OF SPICES RESEARCH
...mination Hall after 10.00 A.M. 6. Candidates who secure the minimum marks prescribed by the Institute in written test only will be eligible for calling for the interview. The number...3784 days ago
2076 days ago
Samtools commands for bioinformatician !
...-g -f sal_ref_sej.fasta sal_sej_sorted.bam.bam > sal_vars.bcf ### calling snp and indels # -c : find s...is "call". type "bcftools" to see current version and commands ### calling snp and indels with no freque...1603 days ago
Comment on "Calling variants in non-diploid systems"
FreeBayes is widely used for calling variants in diploid systems. However, it can also be used for calling variants in pooled samples wh...1044 days ago
Comment on "List of non-commercial NGS genotype-calling software"
...idss – GRIDSS: the Genomic Rearrangement IDentification Software Suite. [ paper-2017 ]smoove – structural variant calling and genotyping with existing...1143 days ago