Kmer: a suite of tools for DNA sequence analysis
More at https://help.rc.ufl.edu/doc/Kmer This also includes: A2Amapper: ATAC, Assembly to Assembly Comparision tool: Comparative mapping between two genome assemblies (same...1003 days ago
Genome Assembly Tools and Software - PART2 !!
...lowgrams into contigs. It is a very fast and accurate DNA sequence assembly software. The DNA sequences are assembled into contigs and a direct comparision of trace date with nucleotide...2697 days ago
Download genome using NCBI esearch command line !
...1" | efetch -format fasta > seq1.fa esearch -db nucleotide -query "CP003784.1" | efetch -format fasta > seq2.fa #fastANI for alignment free comparision #conda install -c bioconda f...1113 days ago
k-mers tutorial - classification and taxonomy
DNA k-mers underlie much of our assembly work, and we (along with many others!) have spent a lot of time thinking about how to store k-mer graphs efficiently, discard redundant data, and count them efficiently. More recently, we've been enthused about using k-mer based simila...Tags: kmer, k-mer, taxonomy, classification, tree, plot, database, similarity, comparision
995 days ago
Comment on "Which are the best statistical programming languages to study for a bioinformatician?"
A nice comparision between R, SAS and Python http://www.datasciencecentral.com/forum/topics/which-one-is-best-r-sas-or-python-for-data-science3276 days ago