SeqMonk:A tool to visualise and analyse high throughput mapped sequence data
...for visualisation and analysis Visualisation of mapped regions against an annotated genome. Flexible quantitation of the mapped data to allow comparisons between data sets Statistica...2061 days ago
KAST: Perform Alignment-free k-tuple frequency comparisons from sequences
Perform Alignment-free k-tuple frequency comparisons from sequences. This can be in the form of two input files (e.g. a reference and a query) or a single file for pairwise comparisons to be made.2052 days ago
BLAST options, setting and defaults
...e query n/a n/a default = universal default = universal default = universal n/a Matrix:substitution matrix to be used for amino acid comparisons no default default = blosum...1971 days ago
genoPlotR - plot gene and genome maps project!
...ch as protein table files and blast results, as well as home-made tabular files. Features Linear representation of several segments of DNA Comparisons represented by areas between...1969 days ago
EGAD: Ultra-fast functional analysis of gene networks
...highly efficient tools to calculate functional properties in networks based on the guilt-by-association principle. These allow rapid controlled comparisons and analyses. Two of the core...1967 days ago
Miropeats: discovers regions of sequence similarity amongst any set of DNA sequences
...es but it is limited by the verbosity of traditional alignment presentation styles. Miropeats enhances the utility of conventional DNA sequence comparisons when looking at long lengths...1711 days ago
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OrthoVenn3: an integrated platform for exploring and visualizing orthologous data across genomes
OrthoVenn3 is a powerful tool for comparative genomics analysis, used as a web server for full genome comparisons, annotation, and evolutionary analysis of orthologous clusters across multiple species. It has already been used by thousands of users from over 60 countries.367 days ago