Results for "conda"
Blogs
List of bioinformatics packages for NGS analysis !
...s the very useful Entrez package for API access to the NCBI databases. [ paper-2009 | web ] Bioconda – A channel for the conda package manager speciali...1149 days ago
Installing Salmon for Trinity !
...nment location: /home/urbe/anaconda3 added / updated specs:...py36_4 331 KB conda-forge jemalloc-5.1.0...1 3.7 MB bioconda conda-4.5.5...nda-forge --> 4.5.5-py36_0 conda-forge Proceed ([y]/n)? y...2139 days ago
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snakepipes: A toolkit based on snakemake and python for analysis of NGS data
...ATAC-seq* scRNA-seq Hi-C Whole Genome Bisulfite Seq/WGBS (*Also available in "allele-specific" mode) snakePipes can be installed via conda : 'conda install -c mpi-ie -c bioconda...1808 days ago
LoRMA: A tool for correcting sequencing errors in long reads
...h high coverage. Furthermore, when the coverage of the read set is at least 75×, the throughput of the new method is at least 20% higher. conda install -c atgc-montpellier l...2074 days ago
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Top-level pages
Creating conda environment for python2.7
...sp;envs directory in your conda directory. Run conda create --help ...th. Use the Terminal or an Anaconda Prompt for the following step...ecific version of Python: conda create -n myenv python=3.4...on and multiple packages: conda create -n myenv python=3.4 sc...2196 days ago
Wire posts
Bio-Scripts
- JitMeta (base) ➜ JitMeta conda create --name JitMetaENV Collecting package metadata (current_repodata.json): done Solving environment: done ==> WARNING: A newer version of conda exists.
1223 days ago
- (JitMetaENV) ➜ JitMeta conda install grabseqs -c louiejtaylor -c bioconda -c conda-forge Collecting package metadata (current_repodata.json): done Solving environment: done ==> WARNING: A newer version of conda exists.
1223 days ago
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Installing Salmon for Trinity !
➜ trinityrnaseq-Trinity-v2.6.6 git:(master) ✗ conda install salmon Solving environment: done ## Package Plan ## environment location: /home/urbe/anaconda3 added / updated specs: - salmon The following packages will be downloaded: package | ...Tags: salmon, NGS, Trinity, Conda, Anaconda
2139 days ago
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Comments
Comment on "How to install Perl modules manually, using CPAN command, and other quick ways"
If using conda conda create --name perlENV perlconda activate perlENV conda install -c bioconda perl-bundle-bioperl conda install -c bioconda perl-bioperl422 days ago
Comment on "How to install Perl modules manually, using CPAN command, and other quick ways"
Installing in CONDA env You can check using which&...the perl that's located within your conda environment. In this case, it should install things into your conda-directory. When you install...also install most Perl packages via conda. Replace the ':' by '-', lowe...422 days ago
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