Results for "convert"
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Perl one-liner for bioinformatician !!!
...spacing, numbering lines, doing calculations, converting and substituting text, del...00, 105, 110, 103); print pack("C*", @ascii)'#converts ascii values into character...)/\u$1/g' #Camel Casingperl -pe 's|\n|\r\n|' #Convert unix new lines into DOS new l...3621 days ago
- ...ckage. It is a multipurpose tool designed for converting reads or other nucleotide...different formats. It supports, and can inter-convert: fastq fasta fasta+qual sam...namimg conventions: reformat.sh in=x.fq vint Convert ASCII-33 to ASCII-64: reforma...
2707 days ago
List of Bioinformatics Software Tools for Next Generation Sequencing
...n: Multi-sample Genotype Model Selection Input: .txt, pileup (SAM/BAM converted to pileup format) Output:...or command- line program; Input: tab- deliminted depth chart format (converted from pileup files) Output:...2902 days ago
- Bash Script source: https://gist.github.com/santhilalsubhash/367befcf5216be4b1fd9 Information: This script converts EnsEMBL GTF (Ex: https://gist.githubusercontent.com...
2099 days ago
Perl Special Vars Quick Reference
...mory allocations for RE optimizations for large alternations. Encoding ${^ENCODING} The object reference to the Encode object, used to convert the source code to Unicode....2637 days ago
Awesome perl frameworks, libraries and software - PART 1
...Moose HTML form handler mskcc/vcf2maf - Convert a VCF into a MAF, where each...ric/epubtohtml - A simple perl script to convert epub documents to documents t...ill/Acme-Perlingual - Acme::Perlingual - Convert perl code to php or something...2482 days ago
- There are several ways you can convert fastq to fasta sequences. Some methods are listed below...] = FASTA output file. default is STDOUT. Bioawk Another option to convert fastq to fasta format using&n...
2298 days ago
PerlOneLiner for Bioinformatician
...erset -le '@l = (1,2,3,4,5); for (@{powerset(@l)}) { print "@$_" }' # Convert an IP address to unsigned int....0.1)'perl -MSocket -le 'print unpack("N", inet_aton("127.0.0.1"))' # Convert an unsigned integer to an IP...2295 days ago
- ...=substr($0,2) ".fa"}; {print >> OUT; close(OUT)}' Input_File To convert Illumina FASTQ 1.3 to 1.8: s...!"#$%&'\''()*+,-.\/0123456789:;<=>?@ABCDEFGHIJ/' f.fastq To convert FASTQ to FASTA: sed -n '1~4s...
2210 days ago
Convert VCF to tab-deilimited table
...fa \ -V reference_genomes_GT.vcf \ -F CHROM -F POS -F REF -F ALT -GF GT \ -o reference_genomes_GT.table multiple_sample.vcf should also be converted to multiple_sample_GT.table...2175 days ago
