Results for "converts"
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...ntigs, or when they run out, single copy contigs, and ii) the small_contig_inserter, which inserts the small contigs within scaffolds buildfasta converts the scaffold(s) map(s) into F...2860 days ago
Dot, an interactive viewer for genome-genome comparison
...e output of MUMmer’s nucmer aligner the most commonly used software method for aligning genome assemblies. A quick script called DotPrep.py converts the delta file to a more stre...2310 days ago
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Awesome perl frameworks, libraries and software - PART 2
...ment some useful practicability. swannman/pdf2gerb - Perl script converts PDF files to Gerber format s...t-Eboks - perl API for eboks.dk dagolden/extutils-parsexs - converts Perl XS code into C code chr...2501 days ago
Top-level pages
Perl one-liner for bioinformatician !!!
..., "hello world"'#Will print the ascii value of the string hello world.perl -le '@ascii = (99, 111, 100, 105, 110, 103); print pack("C*", @ascii)'#converts ascii values into character s...3635 days ago
- Bash Script source: https://gist.github.com/santhilalsubhash/367befcf5216be4b1fd9 Information: This script converts EnsEMBL GTF (Ex: https://gist.githubusercontent.com/...
2113 days ago
News
- ...ctory for use in package overview help pages, and promptPackage() now makes use of them. tools::parse_Rd() gains a new permissive argument which converts unrecognized macros into text...
3312 days ago
SCFBio have developed Sanjeevini
...gically relevant sites on protein 14 Intercalate Rigid Docking of DNA-Ligand complex in intercalation sites 15 DNA sequence to str. Converts DNA sequence to DNA structure...2368 days ago
Bio-Scripts
- ...pare two input ".sam" or ".bam" files. ConvertSequencingArtifactToOxoG (Picar...BedToIntervalList (Picard) Converts a BED file to a Picard Interv...VcfFormatConverter (Picard) Converts VCF to BCF or BCF to VCF....
2082 days ago
Bash script to alignment of short reads against reference genome !
...second mate. #conversion to BAM: samtools view -b - --- this reads SAM from stdin (the - specifier in place of the file name indicates this) and converts to BAM. #sorting the BAM fil...1566 days ago
Tags
- Bash Script source: https://gist.github.com/santhilalsubhash/367befcf5216be4b1fd9 Information: This script converts EnsEMBL GTF (Ex: https://gist.githubusercontent.com/santhilalsubhash/1e7cca357e52a181dc25/raw/cfb803e07900a2baefbb6534f1299fd30cb57a29/sample.GTF) file to annotation...
Tags: Bash, Scriptn GTF, Converts, EnsEMBL, NGS
2113 days ago
plumber:An R package that converts your existing R code to a web API
plumber allows you to create a REST API by merely decorating your existing R source code with special comments. Take a look at an example. # plumber.R #* Echo back the input #* @param msg The message to echo #* @get /echo function(msg=""){ list(msg = paste0("The message is: '", msg, "'"...Tags: plumber, R, package, converts, existing, code, web, API
1887 days ago
Comments
- This tool converts genome coordinates and genome annotation files between assemblies. The input data can be pasted into the text box, or uploaded from a file. ...
3016 days ago
Comment on "Bio++ : C Language libraries for your biological need"
...+ library that enables biologists to express the exact steps needed to execute a protocol. In addition to being suitable for automation, BioCoder converts the code into a readable, Eng...3915 days ago
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