Results for "coverage"
Comments
...at generates synthetic reads based on the whole genome sequencing technology. It can simulate reads with different read lengths, error rates, and coverage levels. The wgsim tool is als...422 days ago
Comment on "CovCal: Coverage / Read Count Calculator"
Sequencing coverage is defined as the average num...me. Estimating the sequencing coverage is very important when you are simulating datasets. The coverage equation is defined as follow...bp), then we will get a sequencing coverage of 20x as follows....590 days ago
Comment on "Sibelia: A comparative genomics tool"
...atisfied by the results (poor coverage, for example), try to set si...ons of the synteny blocks 3. Coverage report 4. Files for generati...("All") row for the overall coverage. It means that there are 11 b...arameter may slightly improve coverage. References ========== 1...1291 days ago
Comment on "REAPR: a universal tool for genome assembly evaluation"
Reapr is a tool trying to find explicit errors in the assembly based on incongruently mapped reads. It is heavily based on too low span coverage, or reads mapping too far or too c...1343 days ago
Comment on "Estimate Genome Size"
...ntify the approximate peak # use find_valleys.pl to help pinpoint the actual peak find_valleys.pl fastq.counts_0.histo # estimate the size and coverage estimate_genome_size.pl --km...1904 days ago
- ...nome size of what is being assembled. It is used primarily to estimate coverage in reads, NOT as the desired...ifference in an overlap between two corrected reads. Assemblies of low coverage or data with biological diffe...
2106 days ago
- ...ead counts (such as duplicate reads, mapped reads and mapped unique reads, rRNA reads, transcript-annotated reads, strand specificity), coverage (like mean coverage, mean coefficient of variatio...
2144 days ago
- ...enome size of what is being assembled. It is used mostly to compute coverage in reads. Fractional values...s pretty quickly but doesn’t assemble anything. It’s a low coverage synthetic metagenome, so no s...
2182 days ago
Comment on "Run miniasm assembler on nanopore reads !"
...n after sub[M::ma_hit_cut::134.429*1.00] 128171424 hits remain after cut[M::ma_hit_flt::137.921*1.00] 99545705 hits remain after filtering; crude coverage after filtering: 91.41[M::mai...2288 days ago
Comment on "Does anyone have Nanopore latest updates?"
92% genome coverage of E. coli, average depth of 3.8x. But from just _43_ reads https://github.com/nickloman/massive-nanopore-silliness http://lab.loman.net/2017/03/09/ultrareads-for-nanopore/2559 days ago
