Results for "detects"
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Software developed in pevsner lab
...of SNP Data pediSNP: Analyze SNP Data From a Pedigree of Two Generations kcoeff: Calculate Cotterman Coefficients of SNP Genotype Data triPOD: Detects chromosomal abnormalities in...3513 days ago
- ...uery using a biologically relevant breakpoint penalty. YAHA can also report multiple mappings per defined segment of the query. We show that YAHA detects more breakpoints in less time...
2676 days ago
CoreTracker, a codon reassignment tracker
CoreTracker detects evidences of codon reassignment from the protein repertoire of a set of genomes by successively applying different algorithms. It’s a filtering appr...2516 days ago
CHSMiner: a GUI tool to identify chromosomal homologous segments
...sses including insertion/deletion and inversion could cause the degeneration of CHSs. Results Here we present a Java software CHSMiner that detects CHSs based on shared gene con...2374 days ago
- ...boundaries in de novo assembled RNA-seq data with the help of a Bloom filter that represents the k-mer spectrum of WGSS reads. The algorithm also detects base substitutions in transcr...
2147 days ago
NxRepair: error correction in de novo assemblies using Nextera Mate Pair Reads
NxRepair is a python module that automatically detects large structural errors in de novo assemblies using Nextera mate pair reads. The decector will break a contig at the site of an...1942 days ago
ClinCNV: Detection of copy number changes in Germline/Trio/Somatic contexts in NGS data
ClinCNV detects CNVs in germline and somatic context in NGS data (targeted and whole-genome). We work in cohorts, so it makes sense to try ClinCNV if you have mor...1585 days ago
- cisMuton is a caller that detects SNVs/indels by comparing target (foreground) and control (background) samples. cisMuton calls mutations from target capture regions, which are def...
1559 days ago
iSeqQC: a tool for expression-based quality control in RNA sequencing
iSeqQC, an expression-based QC tool that detects outliers either produced due to variable laboratory conditions or due to dissimilarity within a phenotypic group. iSeqQC implements va...1554 days ago
- fastv is an ultra-fast tool for identification of SARS-CoV-2 and other microbes from sequencing data. It detects microbial sequences from FASTQ data, generates JSON reports and visual...
890 days ago
