UPhO: Scripts for homology and orthology assessment from genomic sequences.
UPhO finds orthologs with and without inparalogs from input gene family trees. Refer to the Documentation.pdf for more detailed explanations on its usage, installation and dependenc...1959 days ago
molinspiration: broad range of cheminformatics software tools supporting molecule manipulation
Molinspiration offers broad range of cheminformatics software tools supporting molecule manipulation and processing, including SMILES and SDfile conversion, normalization...1953 days ago
Osprey: Network Visualization System
...ed in Breitkreutz, BJ., Stark, C., Tyers M. "Osprey: A Network Visualization System." Genome Biology 2003 4(3):R22 [Genome Biology] [PDF] [PubMed] and suppo...1953 days ago
dotPlotly: Generate an interactive dot plot from mummer or minimap alignments
Create an interactive dot plot from mummer output OR PAF format R script that makes a plotly interactive and/or static (png/pdf) dot plot. Shiny app available for testing1921 days ago
DISTRUCT: a program for the graphical display of population structure
distruct is a program that can be used to graphically display results produced by the genetic clustering program structure or by other similar programs...1889 days ago
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ITIS: the Integrated Taxonomic Information System!
...logue of Life (CoL)partnership is proud to provide the taxonomic backbone to the Encyclopedia of Life (EOL). https://www.itis.gov/pdf/twb_ug.pdf1730 days ago
RepeatModeler2: automated genomic discovery of transposable element families
...quences. RepeatModeler2 is available as source code or a containerized package under an open license (https://github.com/Dfam-consortium/RepeatModeler, https://github.com/Dfam-consortium/TETools).1637 days ago
Machine learning training and courses in bioinformatics !
...rmatics http://www.raetschlab.org/lectures/bertinoro08 Book at https://personal.utdallas.edu/~pradiptaray/teaching/7_deep_learning_bioinfo.pdf1607 days ago