Results for "distance"
Blogs
Five unique traits of effective computational biologist
...n. Learn to perform root cause analysis, learn enough about the underlying system to look for other clues and solutions, and learn to take a long distance view of an issue before deep...3953 days ago
Tools to detect synteny blocks regions among multiple genomes
...Cinteny server can be used for finding regions syntenic across multiple genomes and measuring the extent of genome rearrangement using reversal distance as a measure. OrthoCluster (...2613 days ago
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Bookmarks
- ...redicts the exact centromere locations. For seven yeasts with point centromeres, Centurion predicts most of the centromeres at an average of 5~kb distance from their known locations. F...
3008 days ago
- This is the andi program for estimating the evolutionary distance between closely related genomes. These distances can be used to rapidly infer phylogenies for big sets of genomes. Because andi does not compu...
2917 days ago
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Pages
Bio++ : C Language libraries for your biological need
...Amino acids properties: volume, polarity and charge + physico-chemical distance (Miyata and Grantham) + impor...multiple entries. Phylogenetic reconstuction methods Parsimony (NNI)Distance matrices estimation and I/O t...3951 days ago
Introduction to Bioinformatics
...ic Modeling of Biological Systems Biocomputing For Everyone ! The Biocomputing Glossary Computational Biology Course, Martin Tompa Course Distance Learning in Bioinformatics F...3924 days ago
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Top-level pages
Bioinformatics Courses Around the World
...niversity of Manchester, Masters Program M.Sc. in bioinformatics, distance learning University of Notti...rmatics, aug-oct 1999 ; basics of bioinformatics ; distance course in bioinformatics, 199...3946 days ago
List of generic simulation software/tools/resource with brief description and homepage !!!
...discrete model http://l.web.umkc.edu/liujian/IBDsim IBDSim is a computer package for the simulation of genotypic data under general isolation by distance models. http://raphael.lebloi...3740 days ago
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Wire posts
News
- ...ential) scores for assessing proteins, loops, and interfaces. # The Lennard-Jones interaction energy is now artificially truncated at very short distance; this makes simulations with...
3737 days ago
Release Notes for Genome Workbench 2.10.5
...gnments GFF3 format ((Tutorial)) Tree View: implemented new export mode based on selections (tutorial coming) Tree View: added support for distance based circular trees Tree Vi...2918 days ago
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Opportunity posts
Asst. Professor @ JAIPUR NATIONAL UNIVERSITY
...f learning, providing various integrated and interdisciplinary programmes of study and research in the country. With the opening of the School of Distance Education & Learning, JNU...3784 days ago
- ...nd it's known for a pleasant downtown, active farmer's market, and nearby recreational opportunities. All of Moscow is within biking or walking distance of the University of Idaho. F...
1216 days ago
Bio-Scripts
Calculate some statistics for a DNA alignment with Perl
...mat => 'emboss', -file => 't/data/insulin.water'); my $aln = $alignin->next_aln; my $jcmatrix = $stats->distance(-align => $aln,...2652 days ago
Perl script for calculate Levenshtein distance
sub levenshtein_dist { my ($str1, $str2) = @_; my ($len1, $len2) = (length $str1, length $str2); if ($len1 == 0) { return $len2; } if ($len2 == 0) { return $len1; } my %mat; for (my $i = 0; $i2343 days ago
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Tags
Edit distance application in bioinformatics !
There are other popular measures of edit distance, which are calculated using a different set of allowable edit operations. For instance, the Damerau–Levenshtein distance allows insertion, deletion, substitution, and the transposition of two adjacent characters; ...Tags: Edit, distance, application, bioinformatics
2344 days ago
Comments
Comment on "Phylogenetic for Bioinformatics"
Nice evolutionary distance caculation methods @ https://www.cs.rice.edu/~nakhleh/COMP571/Slides/Phylogenetics-DistanceMethods-Full.pdf593 days ago
Comment on "Sibelia: A comparative genomics tool"
...t pair: ... K1 ABCD K2 ... 2nd pair: ... K1 FGHE K2 ... If the distance between K1 and K2 within each...... act gaga ggc ... 2nd pair: ... act gatg ggc ... As we see, distance between "act" and "ggc" is le...1288 days ago
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