Tools to detect synteny blocks regions among multiple genomes
...y blocks between pairwise comparison of multiple genomes. The reconstructed synteny blocks may overlap each other, be included in one another or duplicated due to micro-rearrangements....2622 days ago
Dynamic chromosome breakpoints !!!
Cell division involves the distribution of identical genetic material, DNA, to two daughters’ cells. During this process, duplicated deoxyribonucleic acid (DNA) goes through a con...3564 days ago
1104 days ago
Method in Comparative genomics !!
...the automatic identification of orthologs for more than 90% of genes and intergenic regions across the four species despite the large number of duplicated genes in the yeast genome. Th...2745 days ago
2229 days ago
Genome of Rainbow Trout Sequenced
...rates the duplication events were older so there are fewer duplicated genes still present. Most of the duplicated genes get lost or modified so...salmon we can see an earlier stage in the process and many duplicated genes are still present,&rdqu...3675 days ago
3520 days ago
Remove the duplicated line present only next to each other with Perl
#!/usr/bin/perl use strict; use warnings; { $_ = ; my $next_line; while( $next_line = ) { #print "current line: $_ -- next line: $next_line$/";...2304 days ago
Perl script to remove duplicated lines !
#!/usr/bin/perl use strict; use warnings; { $_ = ; my $next_line; while( $next_line = ) { #print "current line: $_ -- next line: $next_line$/";...1572 days ago
doubletrouble: identify duplicated genes from whole-genome protein sequences and classify
doubletrouble aims to identify duplicated genes from whole-genome protein sequences and classify them based on their modes of duplication. The duplication modes are i. segmental duplication (SD); ii. tandem duplication (TD); iii. proximal duplication (PD); iv. transposed duplication (TRD) and; v....Tags: doubletrouble, identify, duplicated, genes, whole-genome, protein, sequences, classify
73 days ago
Comment on "Structural variation: the hidden genomic treasure"
...ring SV breakpoints with Hydra. However, it should be noted that this approach seeks to discover breakpoints arising from both "unique" and duplicated (e.g., segmental duplica...2714 days ago