Results for "efficient"
Blogs
Tools to detect synteny blocks regions among multiple genomes
...ynteny detections are: SyntenyTracker ( http://www-app.igb.uiuc.edu/labs/lewin/donthu/Synteny_assign/html/), SyntenyTracker was shown to be an efficient and accurate automated tool f...2614 days ago
List of useful machine / ai learning resources !
ML cheatsheet ! https://github.com/remicnrd/ml_cheatsheet Visual AI / ML https://setosa.io/ev/ Simple and efficient tools for predictive data analysis https://scikit-learn.org/stable/1136 days ago
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Bookmarks
- ...ction of software tools, developed and used by the Vertebrate Genome Biology Group at the Broad Institute. It provides basic data structures for efficient data manipulation (mostly gen...
3012 days ago
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Pages
Bio++ : C Language libraries for your biological need
...n itself be implemented in C, and it is both efficient and portable. C has always ap...a need for a system implementation language efficient enough to displace assembly l...C Evol Biol. 2007; 7: 242.Boussau B, Gouy M. Efficient likelihood computations with...3951 days ago
Genome Assembly Tools and Software - PART2 !!
...bly developed and used in the past 12 years to get assembly jobs done efficiently – and especially accu...of noise, a robust resolution of alternative splicing events, and the efficient merging of multiple assemblie...2689 days ago
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Top-level pages
- ...ures; and (3) the development and implementation of tools that enable efficient access and management of diff...ogy searches are the predominant bioinformatics application, and very efficient search methods have been deve...
3951 days ago
Useful Publications and Websites for Deep Sequencing Data Analysis
...ubMedCentral SAM format specification file Efficient storage of high throughput se...rmatics 28(4):464 - 469, 2012 PubMedCentral Efficient de novo assembly of large gen...Multiplexed shotgun genotyping for rapid and efficient genetic mapping. Andolfatto e...3783 days ago
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Wire posts
News
Vaccination can be dangerous sometimes !!!
...f those antibodies also targeted the stem of H1N1’s haemagglutinin protein, helping that virus fuse to cell membranes. That made H1N1 more efficient at infecting pigs and causing...3898 days ago
- ...lligent data reduction techniques and latest next generation sequencing technologies, our service portfolio provides most accurate and cost efficient solutions for transcript...
3640 days ago
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Opportunity posts
3 days intensive course on Understanding 'omics data in Basel, Switzerland, 19-21st November
Benefits for the participants - Plan more efficient experiments - Correctly interpret results - Communicate results in publications more effectively The course focus is on meth...3880 days ago
Visiting Scientist - Computational Genomics (two positions)
...ving in the semi-arid tropics, especially smallholder farmers, to overcome poverty, hunger, malnutrition and a degraded environment through more efficient and profitable agriculture. I...3593 days ago
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ResearchLabs posts
- Complex networks and network mining: developing graph theoretic, mathematical, and computational algorithms for efficient extraction of function from topology of complex real-world net...
3905 days ago
Bio-Scripts
Pack a perl program with their dependencies on Ubuntu !
...erl script analyzing codon usage in an input sequence to evaluate how efficiently it will be expressed in Ano...tructuralpatterns gdblab.com - GSP4PDB is a user-friendly and efficient application to search and dis...1515 days ago
Tadpole is 250x faster than SPADes assembler !
...ory use increases with K. prealloc=t Pre-allocate memory rather than dynamically growing; faster and more memory-efficient. A float fraction (0-1)...980 days ago
Groups
...e that lets you work more quickly and integrate your systems more effectively. Python is an easy to learn, powerful programming language. It has efficient high-level data structures an...3949 days ago
Tags
D-GENIES: A tool for Dotplot large Genomes in an Interactive, Efficient and Simple way
D-GENIES – for Dotplot large Genomes in an Interactive, Efficient and Simple way – is an online tool designed to compare two genomes. It supports large genome and you can interact with the dot plot to improve the visualisation. We use minimap version 2 to align the two genomes. Then, the PAF f...Tags: D-GENIES, tool, Dotplot, large, Genomes, Interactive, Efficient, Simple, DNA, Sequences, Visualization
2158 days ago
IQ-TREE: Efficient software for phylogenomic inference
A fast and effective stochastic algorithm to infer phylogenetic trees by maximum likelihood. IQ-TREE compares favorably to RAxML and PhyML in terms of likelihoods with similar computing time IQ-TREE found higher likelihoods between 62.2% and 87.1% of the studied alignments, thus effici...Tags: IQ-TREE, Efficient, software, phylogenomic, inference
1907 days ago
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Comments
Comment on "Basic command-line to run BLAST"
...d calculates a score for each alignment that reflects its degree of similarity. BLAST is widely used in biological research because it is fast, efficient, and easy to use. It has help...424 days ago
Comment on "Tools to detect synteny blocks regions among multiple genomes"
.../CHROnicle/SynChro.html https://pdfs.semanticscholar.org/5320/68e328d1aaefa435eefe679f54c018e5c2aa.pdf The paper conclude: SynChro is a fast, efficient and user-friendly tool to rec...1598 days ago
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