Results for "entrez"
Blogs
List of bioinformatics packages for NGS analysis !
...thon, with included cookbook, packaging and thorough documentation. Part of the Open Bioinformatics Foundation. Contains the very useful Entrez package for API access t...1155 days ago
Useful links to therapy, disease, drug and drug-target network data:
...uctures http://scientific.thomson.com/products/iddb/HOMIM: a knowledgebase of human genes and genetic disorders http://www.ncbi.nlm.nih.gov/ sites/entrez?db=omim PDTD: 3D drug targe...1447 days ago
Bookmarks
Entrez Direct: E-utilities on the UNIX Command Line
Entrez Direct (EDirect) is an advanced method for accessing the NCBI's suite of inter...ties or scripts to perform actions that cannot be accomplished entirely within Entrez.2768 days ago
NCBI Prokaryotic Genome Annotation Pipeline
NCBI Prokaryotic Genome Annotation Pipeline is designed to annotate bacterial and archaeal genomes (chromosomes and plasmids). Genome annotation is a multi-level proce...2559 days ago
- +1 more Bookmarks
Top-level pages
- ...and correlated with each other. Special languages have been developed to facilitate this task (such as the Sequence Retrieval System (SRS) and the Entrez system). An unsolved problem...
3960 days ago
Commercial and public next-gen-seq (NGS) software
Integrated solutions CLCbio Genomics Workbench - de novo and reference assembly of Sanger, Roche FLX, Illumina, Helicos, and SOLiD data. Commercial next-gen-seq softwar...3532 days ago
- +5 more Top-level pages
Bio-Scripts
Python script to download covid genome !
...k-sequences'] print("got %d sequences" % len(seqs)) from Bio import Entrez allseq = {} for x in seqs:...ete": nm = x['accession'] print("downloading", nm) dna = Entrez.efetch(db='nucleotide',id=nm,...1149 days ago
Install NCBI entrez-direct and esearch using conda !
$ conda install -c bioconda entrez-direct Collecting package metadata (current_repodata.json): done Solv...be0_2 Proceed ([y]/n)? y Downloading and Extracting Packages entrez-direct-13.9 | 5.2 MB | #...1114 days ago
- +4 more Bio-Scripts
Comments
Comment on "List of gene ontology software and tools"
GeneSCF serves as command line tool for clustering list of genes based on functional annotation (Geneontology, KEGG, REACTOME and NCG). This tool requires gene list in the form of Entrez Gene IDs or Official gene symbols as a input. http://genescf.kandurilab.org/1505 days ago
Comment on "SPAdes hybrid genome assembly"
...38 > single_contig.fa Finally, a quick comparison to the reference: sudo apt-get install mummer curl -s "http://eutils.ncbi.nlm.nih.gov/entrez/eutils/efetch.fcgi?db=nucleot...2187 days ago
