Results for "error"
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QuorUM: An Error Corrector for Illumina Reads
We produce trimmed and error-corrected reads that result in assemblies with longer contigs and fewer errors. We compared QuorUM against several published error correctors and found that it is the best performer in most metrics we use. QuorUM is efficiently implemented making use of current multi-...Tags: QuorUM, Error, Corrector, Illumina, Reads
1555 days ago
How to fiv "Error in library(reshape) : there is no package called ‘reshape’"
[main] Real time: 2.026 sec; CPU: 1.798 secPlotting the coverageError in library(reshape) : there is no package called ‘reshape’Execution halted./setu.sh -k yes -m pe -t 1 -r SRR11140750_1.fastq.gz,SRR11140750_2.fastq.gz 11,91s user 1,30s system 125% cpu 10,533 totalTags: Error, library, reshape, package, R, ‘reshape’
1151 days ago
Rasflow Error: Directory cannot be locked
Error: Directory cannot be locked. Please make sure that no other Snakemake process is trying to create the same files in the following directory:/home/RASflowIf you are sure that no other instances of snakemake are running on this directory, the remaining lock was likely caused by a kill signal ...Tags: Error, Directory, locked, snakemake
976 days ago
Fix rewritable error of ELGG !
The mod_rewrite module uses a rule-based rewriting engine, based on a PCRE regular-expression parser, to rewrite requested URLs on the fly. By default, mod_rewrite maps a URL to a filesystem path. However, it can also be used to redirect one URL to another URL, or to invoke an...Tags: Elgg, Write, Error, Fix, Ubuntu, Server, Learn, Bug, Apache2, Rewriteble
905 days ago
GLIBC_2.23' not found error with alienomics !
(base) lege@Bathymodiolus:~$ ./alienomics_v0.3.1Can't load '/tmp/par-6a6974656e647261/cache-f3e57c2becbb7e00629c1273cf03dd05ad45721b/5b8c5ac2.so' for module POSIX: /lib/x86_64-linux-gnu/libm.so.6: version `GLIBC_2.23' not found (required by /tmp/par-6a6974656e647261/cache-f3e57c2becbb7e00629c1273...Tags: alienomics, error, GLIBC_2.23, not, found, bug, OS
1142 days ago
HALC: High throughput algorithm for long read error correction
HALC, a high throughput algorithm for long read error correction. HALC aligns the long reads to short read contigs from the same species with a relatively low identity requirement so that a long read region can be aligned to at least one contig region, including its true genome region’s repeats i...Tags: HALC, algorithm, long, read, error, correction, NGS, PacBio, Nanopore
2161 days ago
- SSPACE_longread complain for getopts.pl file. To resolve this, download and have in SSPACED-Longreads folder. Cheers :)
Tags: SSAPCE, LongREads, SSPACE-Longreads, Scaffolding, error, getopts, perl, genome
2155 days ago
LSC :a long read error correction tool
Getting Started These simple steps will help you integrate LSC into your transcriptomics analysis pipeline. Read the LSC_requirements for running LSC. Download and set-up the LSC package. Follow the tutorial to see how LSC works on some example data. Read the ...Tags: LSC, long, read, error, correction, tool, fast, correction, sensitivity, good, accuracy
2106 days ago
FMLRC: a long-read error correction tool using the multi-string Burrows Wheeler Transform
FMLRC, or FM-index Long Read Corrector, is a tool for performing hybrid correction of long read sequencing using the BWT and FM-index of short-read sequencing data. Given a BWT of the short-read sequencing data, FMLRC will build an FM-index and use that as an implicit de Bruijn graph. Each long r...Tags: FMLRC, long-read, error, correction, tool, multi-string, Burrows, Wheeler, Transform, nanopore
2098 days ago
Hercules: a profile HMM-based hybrid error correction algorithm for long reads
Choosing whether to use second or third generation sequencing platforms can lead to trade-offs between accuracy and read length. Several studies require long and accurate reads including de novo assembly, fusion and structural variation detection. In such cases researchers often combine both tech...Tags: Hercules, profile, HMM-based, hybrid, error, correction, algorithm, long, reads, PacBio
2088 days ago
