3951 days ago
Useful Publications and Websites for Deep Sequencing Data Analysis
...y-aware detection and correction of sequencing errors. Kelley et al, Genome Biol 11...2010. PubMedCentral Correction of sequencing errors in a mixed set of reads. Salm...t evidence of editing or are simply sequencing errors - the authors stand by their...3784 days ago
List of Bioinformatics Software Tools for Next Generation Sequencing
...rtex assembler.” Input: Output: Atlas 2 Description: specializes in separation of true SNPs and indels from sequencing and mapping errors, last update January 2013 In...2913 days ago
Genome Assembly Tools and Software - PART1 !!
...misFinder is a tool that aims to identify the assembly errors with high accuracy in an unbiased way and correct these errors at their mis-assembled positi...ndash; Genome Assembly Evaluation REAPR (Recognising Errors in Assemblies using Paired Re...2690 days ago
Source Code and Pseudo Code !!
...the end of if statements, for statements, while statements, and at the end of functions. It will make your program much more readable. SPELLING ERRORS ARE NOT ACCEPTABLE...2663 days ago
Awesome perl frameworks, libraries and software - PART 1
...speech recognition and text alignment scheme that allows for the processing of very long (and possibly noisy) audio and is robust to transcription errors. It is mainly written as a pe...2493 days ago
Alignment-free sequence comparison tools available for next-generation sequencing data analysis
...and quality values Software (C++) http://www.dei.unipd.it/~ciompin/main/qcluster.html Reads error correction Lighter Correction of sequencing errors in raw, whole genome sequenci...2375 days ago
Tools for bacterial whole genome annotation
...een them; (ii) IMAGE uses paired-end reads to extend contigs and close gaps within the scaffolds; (iii) ICORN for identifying and correcting small errors in consensus sequences and; (...2336 days ago
LINKS scaffolder bloomfilter setting !
...LOOM FILTER, ONE WILL BE CREATED (.bloom) -p Bloom filter false positive rate (default -p 0.001, optional; increase to prevent memory allocation errors) -x Turn off Bloom filter f...2155 days ago