Results for "estimation"
Blogs
Computer simulation of genetic mechanism !!
...igration and demography http://code.google.com/p/recodon/ rlsim A package for simulating RNA-seq library preparation with parameter estimation http://bit.ly/rlsim-git...2975 days ago
- ...ertions, deletions and duplications. MLGO can be used to infer a phylogeny from genome rearrangement and gene order data, and can also obtain an estimation of ancestral genomes, given a...
2530 days ago
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Bookmarks
7th International Conference on Bioinformatics and Computational Biology (BICoB)
...stering, function prediction, motif discovery, functional site recognition in protein, RNA and DNA sequences. Phylogenetics: Phylogeny estimation, models of evolution, compara...3499 days ago
Kraken: ultrafast metagenomic sequence classification using exact alignments
...omputationally expensive, forcing researchers to use faster abundance estimation programs, which only classify...09 times faster than Megablast and 11 times faster than the abundance estimation program MetaPhlAn. Kraken is...2869 days ago
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Pages
Bio++ : C Language libraries for your biological need
...Phylogenetic reconstuction methods Parsimony (NNI)Distance matrices estimation and I/O to files in Phylip fo...supported!Mixed models (beta). Molecular evolution tools Parameter estimation under maximum likelihood.Ance...3948 days ago
Genome Assembly Tools and Software - PART2 !!
...CEM 0.9.1 – Transcriptome Assembly and Isoform Expression Level Estimation from Biased RNA-Seq ReadsCEM&...Genome Analyzer ConPADE 1.00 – Contig Ploidy and Allele Dosage EstimationConPADE is a tool used to...2686 days ago
Top-level pages
Useful Publications and Websites for Deep Sequencing Data Analysis
...fferential expression analysis of small RNA sequencing experiments. McCormick et al., Silence2(1):2, 2011 PubMedCentral RNA-Seq gene expression estimation with read mapping uncertainty...3779 days ago
List of generic simulation software/tools/resource with brief description and homepage !!!
...combination, migration and demography http://code.google.com/p/recodon/rlsim A package for simulating RNA-seq library preparation with parameter estimation http://bit.ly/rlsim-gitRmetas...3737 days ago
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Wire posts
Opportunity posts
SRF position in Computational Systems Biology Computational biology Group, IIIT-Delhi
...nd for the project. Preferred Qualifications: - Expertise in dynamical systems theory, bifurcation theory, numerical simulations, parameter estimation. Independence and high mo...3723 days ago
ResearchLabs posts
- ...then I have applied HMMs to membrane proteins (refs) and gene identification (refs) and have worked on methods for such things as discriminative estimation of HMMs (refs) and alternativ...
3870 days ago
Bio-Scripts
Tadpole is 250x faster than SPADes assembler !
...elow this. trimends=0 (trim) Trim contig ends by this much. Trimming by K/2 may yield more accurate genome size estimation. contigpasses=16 Build c...976 days ago
Tags
Mash: fast genome and metagenome distance estimation using MinHash
Mash is normally distributed as a dependency-free binary for Linux or OSX (see https://github.com/marbl/Mash/releases). This source distribution is intended for other operating systems or for development. Mash requires c++11 to build, which is available in and GCC >= 4.8 and OSX >= 10....Tags: Mash, fast, genome, metagenome, distance, estimation, MinHash
2336 days ago
MCMCTREE: a phylogenetic program for Bayesian estimation of species divergence times
MCMCTREE is a phylogenetic program for Bayesian estimation of species divergence times using soft fossil constraints under various molecular clock models. This is part of the PAML package. In this tutorial I will analyze an easy example modified from dataset of Inoue et al. (2...Tags: MCMCTREE, phylogenetic, program, Bayesian, estimation, species, divergence, times
2164 days ago
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Comments
- ..., mean coefficient of variation, 5’/3’ coverage, gaps in coverage, GC bias) and expression correlation (the tool provides RPKM-based estimation of expression levels). RNA-Se...
2137 days ago
- ...Fixed average insert size (INT) is used instead of auto estimation. -d{INT} INT : lib_id...Fixed SD of insert size (INT) is used instead of auto estimation. -s INT : Mapping...
2799 days ago
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