GeneOverlap: An R package to test and visualize gene overlaps
...atin. By making the chromatin structure more dense or loose, the gene expression can be turned on or off. Tri-...he gene lists of different histone modifications with that of various expression groups and establish each his...1953 days ago
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iSeqQC: a tool for expression-based quality control in RNA sequencing
iSeqQC, an expression-based QC tool that detects outliers either produced due to variable laboratory conditions or due to dissimilarity within a phenotypic group. iSeqQC imple...1537 days ago
G-NEST: The Gene NEighborhood Scoring Tool
The Gene NEighborhood Scoring Tool (G-NEST) combines genomic location, gene expression, and evolutionary sequence conservation data to score putative gene neighborhoods across all window sizes. Primary author of final code = William F. Martin. Example data files are in the separate repository.1315 days ago
MAGIC: A tool for predicting transcription factors and cofactors driving gene sets using ENCODE data
...WT mice or mice lacking a single TF in a particular neuronal subtype 4) Single cell RNAseq analysis of neurons divided by Immediate Early Gene expression levels. In summary, MAGIC i...1253 days ago
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RNA-Seq differential expression work flow using DESeq2
One of the aim of RNAseq data analysis is the detection of differentially expressed genes. The package DESeq2 provides methods to test for differential expression analysis.983 days ago
RNA-seq workflow: gene-level exploratory analysis and differential expression
Here we walk through an end-to-end gene-level RNA-seq differential expression workflow using Bioconductor pack...o explore the relationship between samples, perform differential gene expression analysis, and visually explor...936 days ago
Fix rewritable error of ELGG !
The mod_rewrite module uses a rule-based rewriting engine, based on a PCRE regular-expression parser, to rewrite requested URLs on the fly. By default, mod_rewrite m...899 days ago