Results for "extract"
Top-level pages
...al functionality, e.g. they can search for similar articles based on word–usage analysis. Text recognition systems are being developed that extract automatically knowledge about...3947 days ago
Most Commonly used Awk by Bioinformatician
...cover most of bioinformatician daily uses of awk. choose rows where column 3 is larger than column 5: awk '$3>$5' input.txt > output.txt extract column 2,4,5: awk '{print $2...3912 days ago
List of In-silico Binding Site Prediction Tools
...a binding ligand(s). Essentially, we use a purely geometric method to extract site-specific spatial pattern...includes two other programs (dpocket & tpocket) that allow you to extract pocket descriptors and test o...3744 days ago
List of Bioinformatics Software Tools for Next Generation Sequencing
...whole genome sequencing data” Input: depth file generated by DFExtract and a config file Output: .r...ption of flat tabular format VariantMaster Description: “extract causative variants for monoge...2909 days ago
- ...ed file.tar containing files tar xf file.tar — extract the files from file.tar ...ar with Gzip compression tar xzf file.tar.gz — extract a tar using Gzip &...
2874 days ago
Genome Assembly Tools and Software - PART1 !!
...al de Bruijn graphs, each representing the transcriptional complexity at at a given gene or locus, and then processes each graph independently to extract full-length splicing isoforms...2686 days ago
Awesome perl frameworks, libraries and software - PART 1
...anagement system and web application framework. The most widely deployed mod_perl application on the planet. mharsch/arcstat - uses Perl to extract, format, and display kstats f...2489 days ago
PerlOneLiner for Bioinformatician
...# Increase all numbers by one in the string$str =~ s/(\d+)/$1+1/ge # Extract HTTP User-Agent string from t...tags with <strong>$html =~ s|<(/)?b>|<$1strong>|g # Extract all matches from a regular ex...2302 days ago
Linux Commands Cheat Sheet for Bioinformatics and Computational Biology Professionals
...ate a tar named file.tar containing files tar xf file.tar — extract the files from file.tar tar c...h; create a tar with Gzip compression tar xzf file.tar.gz — extract a tar using Gzip gzip file&nb...2280 days ago
My commonly used commands in Bioinformatics
FYI, I've found it useful to use MUMmer to extract the specific changes that Racon makes, so I can evaluate them individually: minimap -t 24 assembly.fasta long_reads.fastq.gz | raco...2110 days ago
