Results for "extracting"
Bio-Scripts
Install NCBI entrez-direct and esearch using conda !
...Solving environment: done ==> WARNING: A newer version of conda exists. 13.9-pl5262he881be0_2 Proceed ([y]/n)? y Downloading and Extracting Packages entrez-direct-13.9...1116 days ago
- ...lving environment: done ==> WARNING: A newer version of conda exists. bioconda/label/cf201901 Proceed ([y]/n)? y Downloading and Extracting Packages canu-1.4...
1069 days ago
- vik@vik-Lenovo-ideapad-320-15ISK:~/Downloads/setu/setu$ conda install -c bioconda shasta Collecting package metadata (current_repodata.json): done Solving environment: done ==> WARNING: A newer version of conda exists.
1069 days ago
- vik@vik-Lenovo-ideapad-320-15ISK:~/Downloads/setu/setu$ conda install -c bioconda csvtk Collecting package metadata (current_repodata.json): done Solving environment: done ==> WARNING: A newer version of conda exists.
1069 days ago
- vik@vik-Lenovo-ideapad-320-15ISK:~/Downloads/setu/setu$ conda install -c bioconda seqkit Collecting package metadata (current_repodata.json): done Solving environment: done ==> WARNING: A newer version of conda exists.
1069 days ago
Install Minimap2 using conda !
vik@vik-Lenovo-ideapad-320-15ISK:~/Downloads/setu/setu$ conda install -c bioconda minimap2 Collecting package metadata (current_repodata.json): done Solving environment: done ==> WARNING: A newer version of conda exists.1069 days ago
- vik@vik-Lenovo-ideapad-320-15ISK:~/Downloads/setu/setu$ conda install -c bioconda/label/cf201901 seqtk Collecting package metadata (current_repodata.json): done Solving environment: done ==> WARNING: A newer version of conda exists.
1069 days ago
- ...==> WARNING: A newer version of conda exists. bioconda/label/cf201901::gap2seq-2.0-boost1.61_1 Proceed ([y]/n)? y Downloading and Extracting Packages gap2seq-2.0...
1069 days ago
BASH script for SelfBLAST a genome
...ng blastDB named $MYDB for you"; makeblastdb -in $FASTAFILE -parse_seqids -dbtype nucl -out $MYDB fi if [ $1 = "extract" ] then echo "Extracting the sequence $2 for you from...2666 days ago
Extracting FASTA sequences based on position with perl script !!
#!/usr/bin/env perl #Uses: perl sub-seq.pl input.txt range use strict; use warnings; my $end = pop; my $start = pop; local $/ = '>'; while () {...2636 days ago
