Results for "files"
Blogs
...dules in Mac OS1. SetupCreate a folder for the files:$ mkdir -p /SourceCache$ cd /...arch.cpan.org/~lds/GD-2.46/)Place the "tar.gz" files in "/SourceCache" and double...d I guessed this was because of some left over files from the failed build. I don&...3942 days ago
Tools to detect synteny blocks regions among multiple genomes
...unt.edu/gsv/homepage.php) Genome Synteny Viewer allows users to upload files which contain synteny regions...ze the synteny between them. GSV also allows users to upload annotation files to visualize annotated region...2612 days ago
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Bookmarks
Latest paper on comparison of mapping tools
...earch-pub.gene.com/gmap/ RMAP http://rulai.cshl.edu/rmap/ mrsFAST http://mrsfast.sourceforge.net/Home http://sourceforge.net/projects/mrsfast/files/mrsfast-ultra-3.1.0/ BFAST...3898 days ago
Public Databases for Bioinformatics !
...B of SSD storage 12TB RAID5 local storage Filesystem: /users/$USER defaul...lel programming patterns: # gzip a bunch of files parallel gzip -- *.FILESTOGZ...AP datasets https://www.encodeproject.org/files/ENCFF446WOD/@@download/ENCFF4...1141 days ago
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Files
Prepare for Coding Interview !
...s 2. Trees and Graph algorithms 3. Dynamic Programming 4. Recursive algorithms 5. Scheduling algorithms (Greedy) 6. Caching 1 7. Sorting 8. Files 9. Computability 10. Bitwis...847 days ago
Pages
Bio++ : C Language libraries for your biological need
...evolution Data structure and IO Phylogenetic trees.IO from newick files, with support for multiple en...tuction methods Parsimony (NNI)Distance matrices estimation and I/O to files in Phylip format.Distance met...3949 days ago
BioRuby :Ruby packages for biologist
...ubyForge is a home for open source Ruby projects. BioRuby project was started in late 2000, and is still in progress. Currently, there are over 80 files and 15,000 lines (except comm...3949 days ago
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Top-level pages
- ...thin the context of the sequence, and its six-frame translation. Chromas It will display and prints chromatogram files from ABI automated DNA sequencers, and Staden SCF files which the analysis programs f...
3944 days ago
Bioinformatics Courses Around the World
Bioinformatics Courses around the world Here is the list Bioinformatics courses offered around the world. Reasons for constructing this page are: To show the exten...3945 days ago
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Wire posts
News
Programming language to build synthetic DNA
A team led by Georg Seelig (http://homes.cs.washington.edu/~seelig/index.html) at University of Washington has developed a programming language for chemistry...3871 days ago
Biggest Human Brain Project (HBP) launched!!!
"In neuroscience, the project will use neuroinformatics and brain simulation to collect and integrate experimental data, identifying and filling gaps in our knowledg...3864 days ago
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Opportunity posts
Postdoctoral Associate - Bioinformatics at Duke University Medical Center
...istics and Bioinformatics, please visit our website: http://www.biostat.duke.edu. For more info: http://biostat.duke.edu/sites/biostat.duke.edu/files/Halabi%20-%20Postdoc%20Job%20...3922 days ago
CSIR-INSTITUTE OF GENOMICS & INTEGRATIVE BIOLOGY
...th any Photo ID card and original certificates for entry purpose. Entry will be closed by 10:00 AM. More @ http://www.igib.res.in/sites/default/files/23092013.htm3904 days ago
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Bio-Scripts
Python script to download covid genome !
...but they require you to sign up import requests import yaml seqs = yaml.load(requests.get("https://www.ncbi.nlm.nih.gov/core/assets/genbank/files/ncov-sequences.yaml").text)...1138 days ago
Install BLAST in Ubuntu/Linux and Window !
...h.gov/blast/executables/blast+/2.7.1/ncbi-blast-2.7.1+-win64.exe #Run this installer using the defaults, it should put BLAST under C:\Program Files\NCBI\blast-2.7.1+1149 days ago
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Tryst
Tryst with a Bioinformatician # Dr Altan Kara
...rofile. Alterations in the gene, transcript, protein, and metabolite profiles between normal tissue, normal...ords, one should always easily control input output directories, modify files or directories, annotate and...2364 days ago
Tags
maftools : Summarize, Analyze and Visualize MAF Files
With advances in Cancer Genomics, Mutation Annotation Format (MAF) is being widely accepted and used to store somatic variants detected. The Cancer Genome Atlas Project has sequenced over 30 different cancers with sample size of each cancer type being over 200. Resulting ...Tags: maftools, Summarize, Analyze, Visualize, MAF, Files
1231 days ago
- Resource for downloading all the HISAT2 related files Please cite: Kim, D., Paggi, J.M., Park, C. et al. Graph-based genome alignment and genotyping with HISAT2 and HISAT-genotype. Nat Biotechnol 37, 907–915 (2019). https://doi.org/10.1038/s41587-019-0201-...
Tags: Location, Hisat2, Genome, Download, Files
964 days ago
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Comments
Comment on "Short-read assembly using Spades !"
...reads. If the reads are paired-end, they should be provided in separate files for each read. Run SPAde...gt; Replace read1.fastq and read2.fastq with the names of the input files containing the paired-end rea...423 days ago
Comment on "Spades tutorial PDF"
Spades tutorial http://cab.spbu.ru/files/release3.11.1/manual.html#yaml810 days ago
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