Results for "files"
Bio-Scripts
Set up WGD environment using conda !
...n construction. mcl All-vs.-all blastp + MCL clustering. mix Mixture modeling of Ks distributions. pre Check and optionally rename CDS files. syn Co-linearity analyse...1222 days ago
Install and set up i-adhore for synteny and wgd analysis ! -- step by step --
...done -- Generating done -- Build files have been written to: /home/u...master) ✗ ls CMakeCache.txt CMakeFiles cmake_install.cmake Makefil...34%] Building CXX object src/CMakeFiles/i-visualize.dir/AlignmentDraw...77%] Building CXX object src/CMakeFiles/i-adhore.dir/Multiplicon.cpp....1222 days ago
- ...lecting previously unselected package m4. (Reading database ... 202932 files and directories currently ins...essing triggers for doc-base (0.10.8) ... Processing 10 added doc-base files... Processing triggers for m...
1073 days ago
- ...dy exists, BWISE will use it. Results will be stored in: /home/urbe/JitSimuStudy/test_phase_assebly usage: bwise [-h] [-x PAIRED_READFILES] [-u SINGLE_READFILES] [-s KMER_SOLID...
1009 days ago
Commands to transfer files and folder in docker !
#To copy files between host machine and container (execute the commands on host, not inside container): $ docker cp FILE_OR_FOLDER_ON_HOST CONTAINER_ID:/CONTAINER_DIRECTORY #or $ docker cp CONTAINER_ID:FILE_OR_FOLDER_IN_CONTAINER HOST_DIRECTORY1004 days ago
- ...ld1 [358 kB] Fetched 418 kB in 1s (429 kB/s) Selecting previously unselected package libjellyfish-2.0-2:amd64. (Reading database ... 329798 files and directories currently ins...
1000 days ago
Tadpole is 250x faster than SPADes assembler !
...correction may be done simultaneously. Error correction on multiple files may be done like this: tad...in2= Second input file for paired data. extra= Extra files for use as kmer data, but not...995 days ago
Inreractive SCP / File transfer !
#!/bin/bash #next line prints hearer of script echo "Interactive Script to Copy File (files) / Directory using scp" #next line check if entered value is not null, and if null it w...969 days ago
Downloading mmseqs databases !
...atabases UniProtKB/Swiss-Prot outpath/swissprot tmp #In this case, since Swiss-Prot has a value yes in the Taxonomy column above, all necessary files to use it as a valid seqTaxDB...961 days ago
Perl onliner to check the ids in two files !
perl -lane 'BEGIN{open(A,"ids2.txt"); while(){chomp; $k{$_}++}} if (defined($k{$F[0]})) {print "$_\t$F[0]\t1"} else {print "$_\tNA\t0"}; ' ids1.txt > aaa.xls946 days ago
