Results for "flags"
Blogs
BBTools for bioinformatician !
...pping small RNA's with BBMap use the following flags to report only perfect matche...use the "copyundefined", "hdist", and "qhdist" flags together for a lot of flexibi...et the same sensitivity as BBMap by adding the flags "minid=0.76 maxindel=16k minh...2263 days ago
Basic command-line to run BLAST
..._human_blast_results.tab \ -evalue 1e-5 \ -outfmt 6 \ -max_target_seqs 1 Summary Review: command line programs such as blast use flags to get information about how...2236 days ago
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Bookmarks
- Decoding SAM flags This utility makes it easy to identify what are the properties of a read based on its SAM flag value, or conversely, to find what the SAM Flag value would...
2859 days ago
Standardized velvet assembly report
...H. If using BLAST, add blastall and formatdb. Edit permute.sh to your liking, paying particular attention to the kmer, cvCut, expCov, and other flags To Run: perl fastaAllSize...2696 days ago
Pages
Check Linux server configuration !!
...ion : yescpuid level : 10wp : yesflags ...3645 days ago
Top-level pages
- alignment: the mapping of a raw sequence read to a location within a reference genome. The mapping occurs because the sequences within the raw read match or align to s...
2861 days ago
Perl Special Vars Quick Reference
...hes. $^R Last regexp (?{code}) result. ${^RE_DEBUG_FLAGS} Current value of regexp debugging flags. See use re 'debug';...ith -c switch. $^D Current value of debugging flags $^F Maximum system file...2636 days ago
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Wire posts
Bio-Scripts
Install Parrot Virtual Machine !
...n..................................no. inter::shlibs - Determine flags for building shared libraries...|slow|bounds -R --runcore trace|profiling|subprof -t --trace [flags] -D --parrot-debug[...1529 days ago
Steps to install Conda on Linux !
...anaconda.com/products/individual ) $ chmod 777 Anaconda3-2020.11-Linux-x86_64.sh $ ./Anaconda3-2020.11-Linux-x86_64.sh #Follow the yes/no flags and finish till the end #Che...1174 days ago
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Comments
Comment on "KAT: a K-mer analysis toolkit to quality control NGS datasets and genome assemblies"
...kat comp --help to get help for the program, then create a comparison between the combined reads and the assembly. Make sure that you use the flags for canonical hashes&nbs...1329 days ago
- ...nbsp; Explain the list of bitwise SAM flags. ...
1512 days ago
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