BBTools for bioinformatician !
...pping small RNA's with BBMap use the following flags to report only perfect matche...use the "copyundefined", "hdist", and "qhdist" flags together for a lot of flexibi...et the same sensitivity as BBMap by adding the flags "minid=0.76 maxindel=16k minh...2277 days ago
Basic command-line to run BLAST
..._human_blast_results.tab \ -evalue 1e-5 \ -outfmt 6 \ -max_target_seqs 1 Summary Review: command line programs such as blast use flags to get information about how...2250 days ago
2873 days ago
Standardized velvet assembly report
...H. If using BLAST, add blastall and formatdb. Edit permute.sh to your liking, paying particular attention to the kmer, cvCut, expCov, and other flags To Run: perl fastaAllSize...2710 days ago
Check Linux server configuration !!
...ion : yescpuid level : 10wp : yesflags ...3658 days ago
2875 days ago
Perl Special Vars Quick Reference
...hes. $^R Last regexp (?{code}) result. ${^RE_DEBUG_FLAGS} Current value of regexp debugging flags. See use re 'debug';...ith -c switch. $^D Current value of debugging flags $^F Maximum system file...2650 days ago
Install Parrot Virtual Machine !
...n..................................no. inter::shlibs - Determine flags for building shared libraries...|slow|bounds -R --runcore trace|profiling|subprof -t --trace [flags] -D --parrot-debug[...1543 days ago
Steps to install Conda on Linux !
...anaconda.com/products/individual ) $ chmod 777 Anaconda3-2020.11-Linux-x86_64.sh $ ./Anaconda3-2020.11-Linux-x86_64.sh #Follow the yes/no flags and finish till the end #Che...1188 days ago
Comment on "KAT: a K-mer analysis toolkit to quality control NGS datasets and genome assemblies"
...kat comp --help to get help for the program, then create a comparison between the combined reads and the assembly. Make sure that you use the flags for canonical hashes&nbs...1343 days ago
1526 days ago