Results for "fragment size"
Blogs
How to install Perl modules manually, using CPAN command, and other quick ways
As a bioinformatics programmer, and crunchy data analyser yo... 0 Package(s)Total download size: 1.0 MIs this ok [y/N]: yDown...mmit changes to config variables to disk? [no]Cache size for build directory (in MB)?...3964 days ago
How to Prepare your Bioinformatics CV ?
Preparing a CV is also an art as well as a requirement for a person applying for a job...nts should be consistent. Readability - The headings should be clear. The font size should be no less than 12 poi...3387 days ago
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Bookmarks
Bioinformatics market in India
Key Topics Covered in the Report: The market size of the Indian Bioinformatics Industry , FY’2007-FY’2013 Market segmentation of India bioinformatics industry by application b...3922 days ago
- The enormous size of the loblolly pine genome having 22 billion base pairs compared to only 3 billion in the human genome. In other words, it is seven times larger than...
3711 days ago
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Files
- perl script analyzing codon usage in an input sequence to evaluate how efficiently it will be expressed in Anopheles gambiae. The input codon usage table derived from highly‐expressed A. gambiae genes is appended below.
1655 days ago
Discussion topics
- Like in case of plant genomes where nature of genome is too complex and huge in size to accomplish complete de novo assembly by current sequencing technology. What would be alternate solution? Can we live in reference free world?
3958 days ago
Pages
Bio++ : C Language libraries for your biological need
C has always been a language that never attempts to tie a programmer down - it allows f...th various Alphabet support (DNA, RNA, Proteins, Codons, any 'Word' of a given size).Several containers available...3961 days ago
Check the Size of a directory & Free disk space.
The amount of databases we bioinformat...sing Linux / BioLinux. First: Size of a directory (du) and and s...(df). 'du' – Check the size of a directory $ duThis comm...would give you the directory size of the directory /home/david$...ys a summary of the directory size. It is the simplest way to kn...3716 days ago
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Top-level pages
- 1.Xcode Life Sciences Pvt. Ltd.6B, Eldorado, 112, Nungambakkam High Road,Nungambakkam, Chennai 600034Tamil Nadu, India 2.Mapmygenome™Royal Demeure,HU...
3933 days ago
Useful Publications and Websites for Deep Sequencing Data Analysis
Global overview papers Next generation quantitative genetics in plants. Jiménez-Gómez, Frontiers in Pl...391, 2011 Full Text Improving RNA-Seq expression estimates by correcting for frag...3793 days ago
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Wire posts
News
Chromatin: From nucleosomes to chromosomes, 30 April - 2 May 2014
EMBL-EBI announced the Wellcome Trust Scientific Conference Chromatin: From nucleosomes to chromosomes, which continues EMBL-EBI series of meetings focused on fundamen...3939 days ago
2.4 Mb Genome Size for World's Biggest Virus
The genome size of new discovered Pandoraviruses have roughly twice the size of the record-holding Megavirus genomic code. Interestingly only 6 percent of its genes resembled the genes other organisms. I...3937 days ago
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Opportunity posts
Walk-in-Interview @ Indian Agricultural Statistics Research Institute
Indian Agricultural Statistics Research Institute Library Avenue, Pusa, New Delhi – 11...attested copies of certificates, degrees, testimonials, etc. and one passport size photograph. Original certi...3881 days ago
Project Fellow @ National Institute of Malaria Research
National Institute of Malaria Research Sector 8, Dwarka, Delhi -110077 WALK IN IN...11 AM at the above mentioned address along with a copy of CV (with a passport size photograph affixed), photocop...3841 days ago
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Bio-Scripts
Extract a random sequence from a file
#!/usr/local/bin/perl -w use strict; use warnings; use...t.txt'; open my $in_fh, '', $outputfile; my $size = 21; my $count =...my @start_points = shuffle(0 .. $len_genome-$size); next unless @start_poin...2928 days ago
- #!/usr/bin/env perl use strict; use warnings; use LWP::.../6156/ my $chr = shift; my $pos = shift; my $size = shift; my $usage = "Exam...tract_seq_from_ucsc.pl 14 482780 1000\n"; if (! $size) { die "ERROR: You must pas...
2924 days ago
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Tryst
Tryst with a Bioinformatician # Dr Altan Kara
Dr Altan Kara is a Bioinformatics specialist at the faculty of Gene Engineering and Biotechnology Institute at TUBITAK MAM Research Center. His research intere...2376 days ago
Tags
Quick next generation sequencing (NGS) terms definition
fragment size: the Illumina WGS protocol generates paired-end reads from both ends of longer fragments. The lengths of these fragments are assumed to be sampled from a normal distribution. Therefore, in the absence of structural variants, mapping locations of the paired ends span within an i...Tags: Quick, NGS, definition, fragment size, concordant reads, discordant reads, split reads, read depth
2536 days ago
Comments
Comment on "GraphMap - A highly sensitive and accurate mapper for long, error-prone reads"
...- Loads FASTQ or FASTA files. gfa - Graphical Fragment Assembly format. sam - Sequen...-mb INT Reads will be loaded in batches of the size specified in megabytes. Value...ithmic options: -k INT Graph construction kmer size. [6] -l INT Number of edges p...2306 days ago
