Results for "gap"
Users
About me: ...alysis capability of genomics data over other forms of biological data. ArrayGen constantly strives to develop new solutions, and plug the existing gaps in the technological advance...2723 days ago
Blogs
- ...wing the relative ordering of unrelated duplication events and thus, works on phylogenetic trees even where branch lengths are not provided. GapAdj: Gapped Adjacencies A synteny-bas...
2544 days ago
Protocol for De novo Genome Assembly using Illumina Reads
...f.spbau.ru/quastMauve assembly metrics - http://code.google.com/p/ngopt/wiki/How_To_Score_Genome_Assemblies_with_MauveInGAP-SV - https://sites.google.com/site/nextgengenomics/ingap and http://ingap.sourceforge....1219 days ago
Bookmarks
Bioinformatics software for biologists in the genomics era
...nal and translational inferences. However, the majority of the scientists at the forefront of experimental research are not bioinformaticians, so a gap exists between the user-frien...3801 days ago
- ...se differences Small indels Larger indel or block substitution events Gap filling Identification of local misassemblies, including optional opening of new gaps More at https://github.co...
3023 days ago
- +22 more Bookmarks
Files
Applied Statistics for Bioinformatics using R
...test biological hypotheses. The book intends to be introductory in explaining and programming elementary statistical concepts, thereby bridging the gap between high school levels an...2089 days ago
Pages
Genome Assembly Tools and Software - PART2 !!
...deal simulated assembly of super contigs. GapFiller – Closing the Gap within Paired ReadsGapFiller&...for constructing the string graph. MindTheGap 1.0.0 – Detection and A...better assembled repetitive regions, less gaps and higher accuracy for the...2700 days ago
Bioinformatics in Africa: Part5 - Nigeria
...otechnology Workshops (WABW) to develop an agenda to address the bioinformatics skills gap among scientists&nb...1198 days ago
Top-level pages
Genome Assembly Tools and Software - PART1 !!
...llelized Genome Assembler There is a growing gap between the output of new gen...pCol 1.1.1 – Haplotype Assembly from Long Gapless Reads A fast and memor...broken assembly based on the error calls. GapFiller 1.10 – Close Gaps...2700 days ago
- ...r G or T D.................A or G or T H.................A or C or T V.................A or C or G N.................any base . or -............gap Protein: Amino Acid Code: T...
2259 days ago
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Wire posts
Opportunity posts
Research Associate & Traineeship Positions at CSIR-IHBT Palampur
...ect entitled “Establishment of Bioinformatics i nfrastructure facility for biology teaching through bioinformatics (BIF-BTBI) under the BTISnet [GAP-0145]” Position: Resear...3488 days ago
Bioinformatics Engineer -- Algorithm Development
...ety of tasks ranging from new product development to DNA data processing • Collaborate with Centrillion research scientists in order to bridge the gap between the laboratory and th...3336 days ago
- +3 more Opportunity posts
Bio-Scripts
Needleman-Wunsch Algorithm in Perl
...ent algo (GOTHO 1982 mod) # usage statement die "usage: $0 \n" unless @ARGV == 4; # get sequences, matrix and gapcost from command line my ($seq1, $seq2, $smfile, $gapcost) = @ARGV; # scoring sc...2920 days ago
Installing Porechop on Ubuntu !
...oring_scheme SCORING_SCHEME Comma-delimited string of alignment scores: match, mismatch, gap open, gap extend (default: 3,-6,-5,-2)...2120 days ago
- +4 more Bio-Scripts
Tags
LR_Gapcloser: a tiling path-based gap closer that uses long reads to complete genome assembly
LR_Gapcloser is a gap closing tool using long reads from studied species. The long reads could be downloaed from public read archive database (for instance, NCBI SRA database ) or be your own data. Then they are fragmented and aligned to scaffolds using BWA mem algorithm in BWA package. In the pa...Tags: LR_Gapcloser, tiling, path-based, gap, closer, long, reads, complete, genome, assembly
1466 days ago
gapFinisher: A reliable gap filling pipeline for SSPACE-LongRead scaffolder output
gapFinisher is based on the controlled use of a previously published gap filling tool FGAP and works on all standard Linux/UNIX command lines. They compare the performance of gapFinisher against two other published gap filling tools PBJelly and GMcloser. gapFinisher can fill gaps in draft genom...Tags: gapFinisher, reliable, gap, filling, pipeline, SSPACE, LongRead, scaffolder, NGS, Tools
1577 days ago
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Comments
Comment on "Basic command-line to run BLAST"
...ferent parameters that can be adjusted to customize the search. The most important parameters include the e-value threshold, the word size, and the gap penalties. Perform the s...437 days ago
- ... gap [-on | -off] [-v] [track_rege...p; Display features with or without a separating gap. ...
1534 days ago
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