I-PV: Interactive Protein Sequence Visualization
I-PV is a interactive data visualization software designed for inspection of protein sequences and mutation information. It is mainly used for Genetics and Bioinformatics. So what exactly makes it standout? http://i-pv.org/ipv_rec2502 days ago
Mesquite: A modular system for evolutionary analysis
Mesquite is modular, extendible software for evolutionary biology, designed to help biologists organize and analyze c...phasis is on phylogenetic analysis, but some of its modules concern population gene...2487 days ago
jobTree based python wrapper to run the genome simulation tool suite Evolver
evolverSimControl (eSC) can be used to simulate multi-chromosome genome evolution on an arbitrary phylogeny (Newick format). In addition to simply running evolver...2343 days ago
PLAR: Pipeline for lncRNA annotation from RNA-seq data
Due to several requests, we are releasing an assingment of orthologs, determined using the same methods used in Hezroni et al. (BLAST, Whole Genome Alignment (WGA), an...853 days ago
Mesquite: A modular system for evolutionary analysis
Mesquite is modular, extendible software for evolutionary biology, designed to help biologists organize and analyze c...phasis is on phylogenetic analysis, but some of its modules concern population gene...2249 days ago
minimap2: A versatile pairwise aligner for genomic and spliced nucleotide sequences
git clone https://github.com/lh3/minimap2 cd minimap2 &a...uences against a reference genome ./minimap2 -a test/MT-human.fa test/MT-orang.fa > test.sam #...mmi test/MT-human.fa ./minimap2 -a MT-human.mmi test/MT-orang.fa > test.sam #...2150 days ago
2072 days ago
Platypus: A Haplotype-Based Variant Caller For Next Generation Sequence Data
...he assembly option) deletions up to several kb. It has been extensively tested on whole-genome, exon...ing used in clinical sequencing trials in the Mainstreaming Cancer Genetics programme. Tu...2023 days ago
regioneR: an R package for the management and comparison of genomic regions
Regioner is an R package for the management and comparison of genomic regions. It offer...the functionality of GenomicRanges and a powerful and customizable permutation test framework. With it, it's poss...1975 days ago
GeneOverlap: An R package to test and visualize gene overlaps
Overlapping gene lists can reveal biological meanings and may lead to novel hypotheses. For example, histone modification is an important cellular mechanism that can p...1959 days ago