Results for "genome"
Blogs
Frequently used bioinformatics tools for viral genome analysis !
IVA: accurate de novo assembly of RNA virus genomes. Hunt M, Gall A, Ong SH, Brener...(2012). GAGE: GAGE: A critical evaluation of genome assemblies and assembly algorithms. Salzberg, S. L. et al. Genome Res. 22, 557-67 (2012). KMC:...1042 days ago
Illumina based assembly pipeline steps !
...read marking (picard; optional) Alignment-level QC (picard, SAMtools) Genome-wide and amplicon coverage QC...Nextclade) Individual variant screenshots with annotation tracks (ASCIIGenome) Intersect variants acro...872 days ago
Useful Bioinformatics Analysis Tools !
...bsp;CoMeta: Classification of Metagenomes Using k-mers, PLOS ONE,...GDC Compressor of collections of genome sequences. • ...sp;Robust relative compression of genomes with random access, Bio...TGC Compressor of collections of genomes given in Variant Call Format...858 days ago
List of comparative genomics resources !
...species. BGDB -- Bovine Genome Database Find information ab...struction Tool Based on Whole Genomes Construct phylogenetic tree...risons of Multiple Vertebrate Genomes Access to whole genome alig...ase dedicated to the study of genome conservation. OMA -- the...672 days ago
Online resources on must-read papers in evolutionary biology, for a literature club
...a. Genetics. 54:595-609. 1b. Sachidandam et al. 2001. A map of human genome sequence variation containin...Reich D., Pääbo S., 2010 A draft sequence of the Neandertal genome. Science 328: 710-722. Qua...672 days ago
Must read paper and books in evolution biology !
...a. Genetics. 54:595-609. 1b. Sachidandam et al. 2001. A map of human genome sequence variation containin...Reich D., Pääbo S., 2010 A draft sequence of the Neandertal genome. Science 328: 710-722. Qua...573 days ago
Common methods to discover tandem repeats
...hat are repeated in a contiguous manner in the genome. These sequences are often us...some methods for discovering tandem repeats in genomes: Tandem Repeat Finder:...to comprehensively identify tandem repeats in genomes....418 days ago
Common steps for reads mapping !
...Mapping reads to a reference genome is an essential step in many...to follow for mapping reads to a genome: Choose a read mapper: T...uestion. Index the reference genome: Before mapping reads, the re...cifying the input data, reference genome, and output file format....418 days ago
Steps to find palindrome in genomes !
...s forward. They can be present in genomes and have various biological...ds for discovering palindromes in genomes: Direct sequence search...identify palindromic regions in a genome. It involves plotting the gen...ns. By mapping these reads to the genome, palindromic regions can be i...418 days ago
Entire Human Genome Sequencing !
Cost-effective whole human genome sequencing has revolutionized the landscape of genetic research and per...: https://mynucleus.com/ https://myome.com/ https://nebula.org/whole-genome-sequencing-dna-test/28 days ago
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