Results for "genome announcements"
Blogs
Frequently used bioinformatics tools for viral genome analysis !
IVA: accurate de novo assembly of RNA virus genomes. Hunt M, Gall A, Ong SH, Brener J, Ferns B, Go...1 (2012). GAGE: GAGE: A critical evaluation of genome assemblies and assembly algorithms. Salzberg, S. L. et al. Genome Res. 2...1045 days ago
Illumina based assembly pipeline steps !
Illumina Merge re-sequenced FastQ files (cat) Read QC (FastQC) Adapter trimming (...optional) Alignment-level QC (picard, SAMtools) Genome-wide and amplicon coverage QC...variant screenshots with annotation tracks (ASCIIGenome)...875 days ago
Useful Bioinformatics Analysis Tools !
CoMeta Classificier of reads from metagenomic sequencing experime...CoMeta: Classification of Metagenomes Using k-mers, PLOS ONE,...Compressor of collections of genome sequences. • ...obust relative compression of genomes with random access, Bio...861 days ago
List of comparative genomics resources !
3D-GENOMICS -- A Database to Compare Structural and Functional A...species. BGDB -- Bovine Genome Database Find information ab...struction Tool Based on Whole Genomes Construct phylogenetic tree...risons of Multiple Vertebrate Genomes Access to whole genome alig...675 days ago
Online resources on must-read papers in evolutionary biology, for a literature club
1. *Nick Barton:* - The textbook "Evolution" by Nick Barton, with resources f...9. 1b. Sachidandam et al. 2001. A map of human genome sequence variation containin...l;bo S., 2010 A draft sequence of the Neandertal genome. Scien...675 days ago
Must read paper and books in evolution biology !
1. *Nick Barton:* - The textbook "Evolution" by Nick Barton, with resources f...9. 1b. Sachidandam et al. 2001. A map of human genome sequence variation containin...l;bo S., 2010 A draft sequence of the Neandertal genome. Scien...575 days ago
Common methods to discover tandem repeats
Tandem repeats are DNA sequences that are repeated in a contiguous manner in the genome. These sequences are often us...ds for discovering tandem repeats in genomes: Tandem Repeat Finder:...hensively identify tandem repeats in genomes....421 days ago
Common steps for reads mapping !
Mapping reads to a reference genome is an essential step in many types...s to follow for mapping reads to a genome: Choose a read mapper: T...question. Index the reference genome: Before mapping reads, the re...ecifying the input data, reference genome, and o...421 days ago
Steps to find palindrome in genomes !
Palindromes are sequences of nucleotides that...rward. They can be present in genomes and have various biological...or discovering palindromes in genomes: Direct sequence search...tify palindromic regions in a genome. It involves plotting the gen...421 days ago
Entire Human Genome Sequencing !
Cost-effective whole human genome sequencing has revolutionized the landscape of genetic research and personalize...anies: https://mynucleus.com/ https://myome.com/ https://nebula.org/whole-genome-sequen...31 days ago
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