10 NGS services companies around the globe !
...ystems. The company’s genome services are suitable for cus...ion sequencing services including genomes, targeted (re)-sequencing, h...compute resources, data analysis reports, and case studies. GATC Biot...dia. Popular mentions – MedGenome (India), DNA Link, Inc. (South...1258 days ago
Bioinformatics tools for telomere to telomere assembly !
● Merfin – k-mer-based assembly and variant calling...; algorithm that leverages a pangenome reference built from haplotype-resolved genome assemblies in conjunction wit...riptome data (Richard Kuo @GenomeRIK)● pbaa (PacBio A...long transcriptomic reads to a genome,...991 days ago
Protocol for De novo Genome Assembly using Illumina Reads
...hod for small to medium-sized genomes. What is de novo genome assembly?The method of taking...the DNA originated relates to genome assembly. No previous knowled...on a sequencing computer in a genome sequencing experiment. Depend...ew/42542/trimmomatic-command Genome Assembly:The object of this p...1203 days ago
Ancient whole genome duplication (WGD) detection tools !
There are two methods for ancient WGD detection, one is collinearity analysis, and the other is based o.../miniconda3/envs/wgd/make -j 4 make insatall Take the sugarcane genome Saccharum spontaneum L as an example. The genome...1154 days ago
Frequently used bioinformatics tools for viral genome analysis !
IVA: accurate de novo assembly of RNA virus genomes. Hunt M, Gall A, Ong SH, Brener J, Ferns B, Gou...-1 (2012). GAGE: GAGE: A critical evaluation of genome assemblies and assembly algorithms. Salzberg, S. L. et al. Genome...1046 days ago
Illumina based assembly pipeline steps !
Illumina Merge re-sequenced FastQ files (cat) Read QC (FastQC) Adapter trimming (f...optional) Alignment-level QC (picard, SAMtools) Genome-wide and amplicon coverage QC...l variant screenshots with annotation tracks (ASCIIGenome)...876 days ago
Useful Bioinformatics Analysis Tools !
...uencing data, Scientific Reports, 2020; 10(578): GDC Compressor of collections of genome sequences. •  ...ein families, Scientific Reports, 2017; 7(41553):•&n...Compressor of collections of genomes given in Variant Call Format...862 days ago
List of comparative genomics resources !
3D-GENOMICS -- A Database to Compare Structural and Functional A...species. BGDB -- Bovine Genome Database Find information ab...struction Tool Based on Whole Genomes Construct phylogenetic tree...risons of Multiple Vertebrate Genomes Access to whole genome alig...676 days ago
Online resources on must-read papers in evolutionary biology, for a literature club
1. *Nick Barton:* - The textbook "Evolution" by Nick Barton, with resources fo...09. 1b. Sachidandam et al. 2001. A map of human genome sequence variation containin...ml;bo S., 2010 A draft sequence of the Neandertal genome....676 days ago
Must read paper and books in evolution biology !
1. *Nick Barton:* - The textbook "Evolution" by Nick Barton, with resources fo...09. 1b. Sachidandam et al. 2001. A map of human genome sequence variation containin...ml;bo S., 2010 A draft sequence of the Neandertal genome....576 days ago