Results for "genotyping"
Users
Brief description: Currently, I'm pursuing a PhD at Bioinformatics Centre, University of Pune, Pune, India. I have developed an algorithm for alignment-free sequence analysis with its applications in molecular phylogeny, clustering and sero/genotyping .2937 days ago
Blogs
Structural variation: the hidden genomic treasure
...wever, compared to SNPs, accurate detection, genotyping and understanding of CNVs is...Tools CNVnatora tool for CNV discovery and genotyping from depth of read mapping.20...uralVariants.pdfBreakSeq, structural variant genotyping using split reads Link&n...2715 days ago
Software and Tools to detect structure variation with long reads !!
...lies supporting each call Higher sensitivity for SV calls using tiled local assemblies across the entire genome instead of "signature" regions Genotyping of SVs with Illumina paired-e...2620 days ago
- +2 more Blogs
Bookmarks
Next Generation Sequencing (NGS) Tutorials
...ad cleaning, mapping and SNP calling using Next Generation Sequence 10.1186/1471-2164-12-285 A framework for variation discovery and genotyping using next-generation DNA seq...3499 days ago
- ...ome STRucture In Populations) is a suite of tools for discovering and genotyping structural variations using s...nd processing more genomes provide better results.To run discovery or genotyping on a single sequenced genome...
2810 days ago
- +8 more Bookmarks
Pages
Bioinformatics in Africa: Part2 - Kenya
...key tropical pathogens) 4. Structural bioinformatics 5. Development of Bioinformatics Data Management Systems 6. Gene Mining 7. High Throughput Genotyping 8. Microarray data management...1196 days ago
Top-level pages
Useful Publications and Websites for Deep Sequencing Data Analysis
...on mutations, and includes a software package called FSTpoolit for analysis of the resulting sequence reads.] Genotyping by sequencing Genome-wide genetic marker discovery and genotyping using next-generation sequenc...3791 days ago
List of Bioinformatics Software Tools for Next Generation Sequencing
...ll indels from diploid sample; designed to run on “nux-like platforms” Input: BAM Output: VCF KvarQ Description: in silico genotyping for selected loci in bacteria...2921 days ago
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News
High Density Sheep SNP Genotyping Chip released!!!
...libraries with the Illumina Genome Analyzer IIx. A set of 600 SNPs were identified by BAC end sequencing and validated with Illumina GoldenGate Genotyping Assays over 403 animals from...3909 days ago
Affy has acquired Eureka Genomics for 15M $
...Corporation To Provide High Throughput And Economical Crop And Animal Genotyping http://www.thestreet.com/sto...corporation-to-provide-high-throughput-and-economical-crop-and-animal-genotyping.html3285 days ago
Opportunity posts
Assistant Professor @ King Saud University Riyadh
...on providing analytical support for next generation sequencing data analysis – Exome-sequencing, Targetted sequencing as well as high-throughput genotyping on Illumina platform. Job...3738 days ago
Domain Analyst - Bioinformatics
Company Name: Persistent Systems Limited Location: PuneExperience: 7 - 12 Years Keywords / Skills: Bioinformatics, "Sequence Analysis", "Genotyping"Function: IT,Pharmaceutical/ Biotech...3677 days ago
- +5 more Opportunity posts
ResearchLabs posts
- ...ckdown, or overexpression, or other perturbation experiments in combinations of genes in S. cerevisiae, C. elegans or mouse. Using genome-scale genotyping of natural polymorphisms in S...
3720 days ago
Bio-Scripts
- ...overy: Tools that perform variant calling and genotyping for short variants (SNPs, SNV...icsDB GenotypeGVCFs Perform joint genotyping on one or more samples pre-ca...
2087 days ago
- #GATK is a toolkit developed by the broad institute focused primarily on variant discovery and genotyping. It is open source, hosted on github, and available under a BSD 3-clause licens...
823 days ago
Tags
High Density Sheep SNP Genotyping Chip released!!!
If you are working on Sheep genomics then there is a good news for you. FarmIQ in conjunction with Illumina and the International Sheep Genomics Consortium (ISGC) are today announcing completion of the “Ovine Infinium® HD SNP BeadChip”, a high definition SNP chip for ship gen...Tags: ovine, sheep, mutation, SNP, genotyping, illumina
3909 days ago
- Variation graphs provide a succinct encoding of the sequences of many genomes. A variation graph (in particular as implemented in vg) is composed of: nodes, which are labeled by sequences and ids edges, which connect two nodes via either of their respective ends paths, describe genomes,...
Tags: VG, variation, graph, structures, interchange, formats, alignment, genotyping, variant, calling, methods, snp
1571 days ago
- +1 more Tags
Comments
Comment on "List of non-commercial NGS genotype-calling software"
...ash; GRIDSS: the Genomic Rearrangement IDentification Software Suite. [ paper-2017 ]smoove – structural variant calling and genotyping with existing tools, but,smoo...1154 days ago
