GffCompare: Program for processing GTF/GFF files
The program gffcompare can be used to compare, merge, annotate and estimate accuracy of one or more GFF files (the “query” files), when compared with a reference annotation (also provided as GFF).1778 days ago
RaGOO: Fast Reference-Guided Scaffolding of Genome Assembly Contigs
...kes less than a minute and the whole pipeline with SV calling takes ~2 minutes. Intact ordering and orienting of contigs. Misassembly correction GFF lift-over Structural variant...1669 days ago
SynVisio: An Interactive Multiscale Synteny Visualization Tool for McScanX.
...pular synteny and collinearity detection toolkit and generate publication ready images. SynVisio requires two files to run: The simplified gff file that was used as an...1452 days ago
Liftoff: an accurate tool that maps annotations in GFF or GTF between assemblies
Liftoff, an accurate tool that maps annotations in GFF or GTF between assemblies of the same, or closely-related species. Unlike current coordinate lift-over tools which requi...1421 days ago
Liftoff: An accurate GFF3/GTF lift over pipeline
Liftoff is a tool that accurately maps annotations in GFF or GTF between assemblies of the same, or closely-related species. Unlike current coordinate lift-over tools which require...1249 days ago
CrossMap: program for genome coordinates conversion between different assemblies
...=> hg19 (GRCh37)). It supports commonly used file formats including BAM, CRAM, SAM, Wiggle, BigWig, BED, GFF, GTF, MAF VCF,...847 days ago