Results for "go"
Top-level pages
Single Cell RNAseq data analysis tutorial !!
...r.212720.116.abstract SCODE: An efficient regulatory network inference algorithm from single-cell RNA-Seq...Locally linear Inference of Cellular Expression Relationships (SLICER) algorithm for inferring cell traje...2350 days ago
- RNA-sequencing (RNA-seq) has a wide variety of applications, but no single analysis pipeline can be used in all cases. We review all of the major steps in RNA-seq dat...
2350 days ago
Edit distance application in bioinformatics !
...distance("foo",@words); print "@distances"; # prints "2 0 3" use Algorithm::LCSS qw( LCSS CSS CSS_S...nd Text::Levenshtein::XS are both versions of the Levenshtein algorithm that require a C compile...2340 days ago
Tools for bacterial whole genome annotation
...tes per genome. This is the best way to get good quality annotation in a fla...the quality of functional information is not as good as RAST, and you will...t combines ab initio gene prediction algorithms with homology based met...2331 days ago
Bioinformatics Web Application Development with Perl
...f the program, and maybe making a subroutine are gone. The Perl world has seen th...value with all three. These are neither the only good possibilities (think of POE...e with the CPAN, but the intention is to provide good working defaults in a packa...2321 days ago
BBSplit: Read Binning Tool for Metagenomes and Contaminated Libraries
...The normal use of BBSplit is like Seal, either quantifying how many reads go to each reference, or splitti...apping to multiple references simultaneously, using BBMap. The reads go to the bin of the reference t...2314 days ago
- ...of sequences. If [-o] is specified, report will be printed to STDOUT. If [-o] is not specified (and output goes to STDOUT),...
2304 days ago
PerlOneLiner for Bioinformatician
...lar localtime mktime @now' # Print date 14 months, 9 days and 7 seconds agoperl -MPOSIX -le '@now = local...@list_of_numbers)' # Calculate GCM of numbers 20 and 35 using Euclid's algorithmperl -le '$n = 20; $m = 3...2301 days ago
List of visualization tools for network biology
...orge.net Medusa Semantic and multi-edged simple networks https://sites.google.com/site/medusa3visualiza...n maps. http://www.ariadnegenomics.com/downloads/ PIVOT Layout algorithms for visualizing protein...2287 days ago
List of visualization tools for genome alignments
...I Handling genome position files in NGS studies http://sing.ei.uvigo.es/pileline/pilelinegui.html...tible http://www.htslib.org/ SEWAL Uses a locality-sensitive hashing algorithm to enumerate all unique...2283 days ago
